![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do001157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 122aa MW: 12551.3 Da PI: 8.0471 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 94 | 1.3e-29 | 32 | 86 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY eC++NhAas+GghavDGC+Ef+++ geegt+aal+CaACgCHR+FHRr v+ Do001157.1 32 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEEGTTAALRCAACGCHRSFHRRVVQ 86 68**************************8.999********************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 25 | No hit | No description |
Pfam | PF04770 | 1.6E-29 | 33 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-17 | 34 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.1E-25 | 34 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.645 | 35 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 122 aa Download sequence Send to blast |
MKRMVILRRC HPPPPPPPVL LGGGCCGGAG GGVRYGECRR NHAASMGGHA VDGCREFLAE 60 GEEGTTAALR CAACGCHRSF HRRVVQRCCC CLCCGADAAA ASAARWDDGC SPESSASSTT 120 PS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do001157.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT065618 | 4e-80 | BT065618.1 Zea mays full-length cDNA clone ZM_BFb0349A13 mRNA, complete cds. | |||
GenBank | EU971969 | 4e-80 | EU971969.1 Zea mays clone 372958 mini zinc finger 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321184.1 | 4e-50 | mini zinc finger protein 4 | ||||
Swissprot | Q0J5F8 | 3e-34 | MIF4_ORYSJ; Mini zinc finger protein 4 | ||||
TrEMBL | A0A1E5VQB8 | 5e-80 | A0A1E5VQB8_9POAL; Mini zinc finger protein 4 | ||||
STRING | GRMZM2G370863_P01 | 2e-40 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28917.1 | 1e-24 | mini zinc finger 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|