PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000955.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 22405.4 Da PI: 9.5115 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130 | 1.1e-40 | 31 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+aela++++ Do000955.1 31 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADATNSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAELATVRA 129 7***********************************************************************************************998 PP DUF260 100 e 100 e Do000955.1 130 E 130 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.369 | 30 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-40 | 31 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTAARRSCSL PAGAGAVAGA GPGSALNTIT PCAACKLLRR RCAQECPFSP YFSPLEPHKF 60 AAVHKVFGAS NVSKMLLEVH ESQRADATNS LVYEANLRLR DPVYGCMGAI LTLQQQVQAL 120 EAELATVRAE IVRHRYRPTA AATSPVATVL PSSHASQLLA ASAASRGLHA RRPVGTRTAT 180 LAAASSSSSS AVYAAAASSS TDYSSITNEN VPYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-40 | 31 | 134 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-40 | 31 | 134 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000955.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 1e-133 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808905.1 | 1e-109 | LOB domain-containing protein 15-like isoform X2 | ||||
Swissprot | Q9AT61 | 6e-69 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A1E5W3W5 | 1e-152 | A0A1E5W3W5_9POAL; LOB domain-containing protein 13 | ||||
STRING | Pavir.Ca01098.1.p | 1e-109 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 8e-59 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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