PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000884.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 854aa    MW: 93064.3 Da    PI: 9.0229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000884.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18387486198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l ++
  Do000884.1 387 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLIMG 483
                 89**************************555566778***************9989999999***9.********************987.77777777 PP

                 EE- CS
          B3  96 vfr 98 
                 +++
  Do000884.1 484 FRK 486
                 765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-19384486IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-30384489IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-22385486No hitNo description
PfamPF023629.5E-16387486IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279387488IPR003340B3 DNA binding domain
SMARTSM010193.6E-21387487IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MSSPAPQKAP PAPPAPPVAA PATVSATPIS VQPPPIQPKP PPPPPPQQQQ QQPQPAGPVS  60
GPQPPTPAHL LNLGPQPPMY RGPICWNSYC KDPDPNSFGR RGWKAPPSPV WASPMHNSQN  120
VPDNRKDIPV KSWRPPAGQI SSQWRQTNLW SVSSIQSDLQ QRLAFEFDRP SGSEKLLPGR  180
TFIHAQERKF DDMHDRPTTP AGMNHIMRER DANGHGQPTN MDPAYSYSLY HRDGSHPNNL  240
HDPSHHGGET DSLSSRKVAM PDPSTGVDAS FKIDSHHPSI LKDDPPSLSV GLASNFASQN  300
GQKDHIRIAP TQQQAQIASS SLQKQFYSHA VTGYNEFQAQ LRNGRPRMDA KARSQLLPRY  360
WPRITDQELQ HLSNEYPISN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPPISQPE  420
GLPLKVQDAS GKEWIFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRIDPEGKL  480
IMGFRKATNI SSEQEQTTKP ANGAPATPEA NGKVSAPDSS PNAAVSRQNK VNTETKSSSP  540
VEQATASKIE KDGLTQKEGP GTASSSPGPV KRKATNLTPK NKRLRMENEE SMELKITWEE  600
AQELLRPPPK APSIVIVDGH EFEEYEEPPI LGRKTYFVTD QSGSSCEAPQ EISMEELAEL  660
IPIKSGQGGA KKPKTRTEGD AIDSSDGLDT LANLALGEGE ALPSQPTTKH PRHRPGCSCI  720
VCIQPPSGKG PKHKQTCTCN VCMTVRRRFR TLMLRREKKT LADPPPSRKQ REAGQSSETG  780
TKAGSGPPAT SASATNPSKK ADGNANGPED MAVDRKATSS PVKNHIDLNI QPERDDEQSP  840
KSGVAGALSR DNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-633624942131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000884.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548470.0BT054847.1 Zea mays full-length cDNA clone ZM_BFb0181D20 mRNA, complete cds.
GenBankKJ7280340.0KJ728034.1 Zea mays clone pUT6177 ABI3VP1 transcription factor (ABI22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800001.10.0B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1E5VPN00.0A0A1E5VPN0_9POAL; B3 domain-containing protein
STRINGSi028829m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-119HSI2-like 1