PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do000713.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 456aa MW: 50834 Da PI: 5.8356

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do000713.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	9e-34	257	311	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav++LGG+ekAtPk +l+lmkv+gLt++hvkSHLQkYR Do000713.1 257 KPRLRWTLELHERFVEAVNKLGGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRF 311 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.623	254	314	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-17	255	311	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-31	256	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-25	257	311	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	259	310	IPR001005	SANT/Myb domain
Pfam	PF14379	6.8E-21	341	387	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MSDYLIGLGT ACSYSDIHYV VLDQAVVNDQ RHRKPRRAMS TQSIKSEMIG SMSLTKILPF 60 DLQKCSPDSN PESAVSRISQ AALSVPISSS SSTFCTSMFS PFQTNSESCR QKGALPFLPH 120 PPKCEQQQQQ ISAGQSSSTS SLLFGADLSN VGHDDAERSG DLKDFLNLSG DVSEGSFHGE 180 SNAMAFSEQM EFQFLSEQLG IAITNNEESP RLDDIYDRPP QTSSCPVPSY SDQEDLPSTV 240 SPVKVQLSSS RAAACNKPRL RWTLELHERF VEAVNKLGGP EKATPKGVLK LMKVEGLTIY 300 HVKSHLQKYR FATYLPEIKE EDKKSQTVIP GSDAGKKKSL QVAEALRMQM EVQKQLHEQL 360 EVQRQLQLHI EEHARYLQKI LEEQQKARNS LSAKRNSTQD PLPESTEKEE TEMKAETTSD 420 PLSRQKISDT DMECNSQVDN KNAKAQVDLE KETLRS

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MSDYLIGLGT ACSYSDIHYV VLDQAVVNDQ RHRKPRRAMS TQSIKSEMIG SMSLTKILPF  60
DLQKCSPDSN PESAVSRISQ AALSVPISSS SSTFCTSMFS PFQTNSESCR QKGALPFLPH  120
PPKCEQQQQQ ISAGQSSSTS SLLFGADLSN VGHDDAERSG DLKDFLNLSG DVSEGSFHGE  180
SNAMAFSEQM EFQFLSEQLG IAITNNEESP RLDDIYDRPP QTSSCPVPSY SDQEDLPSTV  240
SPVKVQLSSS RAAACNKPRL RWTLELHERF VEAVNKLGGP EKATPKGVLK LMKVEGLTIY  300
HVKSHLQKYR FATYLPEIKE EDKKSQTVIP GSDAGKKKSL QVAEALRMQM EVQKQLHEQL  360
EVQRQLQLHI EEHARYLQKI LEEQQKARNS LSAKRNSTQD PLPESTEKEE TEMKAETTSD  420
PLSRQKISDT DMECNSQVDN KNAKAQVDLE KETLRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do000713.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038317	1e-123	BT038317.1 Zea mays full-length cDNA clone ZM_BFb0227D23 mRNA, complete cds.
GenBank	EU954590	1e-123	EU954590.1 Zea mays clone 1472551 hypothetical protein mRNA, complete cds.
GenBank	JX469978	1e-123	JX469978.1 Zea mays subsp. mays clone UT3338 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698680.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	0.0	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A1E5VWC1	0.0	A0A1E5VWC1_9POAL; Protein PHOSPHATE STARVATION RESPONSE 3
STRING	Pavir.Aa03223.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-79	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]