PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000601.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 373aa    MW: 39335.8 Da    PI: 7.3826
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000601.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26034.27.3e-1125530749101
      DUF260  49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                 l  +er +a++++++eA+ r++dPvyG++g++ +lq ++  ++ ela++++++
  Do000601.1 255 LLVHERGKAADTMAMEAHRRVQDPVYGCAGIVGRLQGEIIAVQCELARTQAQI 307
                 56789*******************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.630.102.1E-2268151No hitNo description
SuperFamilySSF531877.86E-2369108No hitNo description
SuperFamilySSF520251.57E-14116204No hitNo description
Gene3DG3DSA:3.50.30.303.6E-9152201No hitNo description
SuperFamilySSF531877.86E-23179253No hitNo description
Gene3DG3DSA:3.40.630.102.1E-22202253No hitNo description
PfamPF043893.3E-6207253IPR007484Peptidase M28
PfamPF031952.3E-8255304IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MPHSVLARLP PGSVRLVIAF GLLLLVSLLV LHHRRPAAGP LARAATGGRG RLRDPAALFL  60
SLSAGANASI KADLRVLTAG PHLAGTPAAA PAAAHVLDRL RAAGLQTLTR EYAPLLSYPK  120
PGRASLALLR PDGSPLASLS LDEPADDVVG SRLVHPYHAY APSGGAIAEA VFVNLGREED  180
YAALEALGVG VHGRVVVAWR GGGDAWTYGA VDPNSGTAAL LDIARRLGVM LXSGWKPRRS  240
IILCSWDAEE FGMNLLVHER GKAADTMAME AHRRVQDPVY GCAGIVGRLQ GEIIAVQCEL  300
ARTQAQIAVH AAAARAQPAV GTQLNAPARA ATPQQQEQGD GQLMQYPFQG LDALLVDDYR  360
VDVNFVDDEM KTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fec_A2e-14201253333385Glutamate carboxypeptidase III
3fed_A2e-14201253333385Glutamate carboxypeptidase III
3fee_A2e-14201253333385Glutamate carboxypeptidase III
3ff3_A2e-14201253333385Glutamate carboxypeptidase III
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of meristem development and seed maturation processes. Mediates regulation of embryonic regulatory genes and genes controlling abscisic acid (ABA) biosynthesis and turnover in developing seeds. May be required for the synthesis of small signaling molecules that integrates meristem and embryo formation in seeds. {ECO:0000269|PubMed:18203869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000601.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981489.11e-77probable glutamate carboxypeptidase VP8
SwissprotA0A1D6L7094e-72VP8_MAIZE; Probable glutamate carboxypeptidase VP8
TrEMBLK4A6F33e-76K4A6F3_SETIT; Uncharacterized protein
STRINGSi034457m5e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP803867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-08LBD family protein
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]