PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000495.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YA
Protein Properties Length: 289aa    MW: 32001.1 Da    PI: 11.1199
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000495.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.41e-32121177158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R+RgsgGrF
  Do000495.1 121 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKARKPYLHESRHLHAMKRARGSGGRF 177
                 59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-38119180IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.657120180IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-28122177IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-23123145IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-23154177IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRRGGVVGRW RGERFFYTDG KGGNLHCSNA FIFLLSGNSF RKMVNDHMRS TLTFDNKQPL  60
FASQDIEYSQ PIACISYPYN DSGSDWAAYG SRASAATVFH PQIAGGGTSA RIPLPLELAE  120
NEPIYVNPKQ YHGILRRRQL RAKLEAQNKL VKARKPYLHE SRHLHAMKRA RGSGGRFLNT  180
KQLQQQQSRT ASTGSTTNGT RSSGSTHLWL GGAEAGDRTM PTPKAMTSQY NSKKAVSSAP  240
AFTMTPMLRR DDAFFQHPSH TLSFSGHLGQ ASAQAGMHNG TQQRVPVMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21121182263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954092.11e-157nuclear transcription factor Y subunit A-8 isoform X2
TrEMBLA0A1E5W4T70.0A0A1E5W4T7_9POAL; Nuclear transcription factor Y subunit A-8
STRINGSi019645m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.43e-40nuclear factor Y, subunit A8