PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 180aa MW: 20334.2 Da PI: 4.2682 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 63.9 | 3.1e-20 | 8 | 61 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtP...ktilelmkvkgLtlehvkSHLQkYRl 55 lrW+ +LH Fv+av LGG++ A P k+ +e+m+v gLt++++kSHLQkYR Do000473.1 8 LRWSDDLHMIFVKAVVYLGGPH-AKPfalKETMEAMGVMGLTIQNIKSHLQKYRG 61 89******************98.888677889999*******************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.48E-11 | 2 | 63 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-19 | 5 | 61 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-15 | 8 | 61 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MQPTRSFLRW SDDLHMIFVK AVVYLGGPHA KPFALKETME AMGVMGLTIQ NIKSHLQKYR 60 GKFELGAEAC DEVPSTTSLS KAALDQAAKI LMDTDTVMLE MEMVNSFLMD DVEMVDNNFS 120 VDLVQMMEKE LMDEIQVVHG YNDNEANLSC SQLIEHNSQY PQTVIDEYIA DLANYAFGHL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000473.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021306319.1 | 6e-78 | myb family transcription factor PHL12-like isoform X1 | ||||
Refseq | XP_021306322.1 | 6e-78 | myb family transcription factor PHL12-like isoform X1 | ||||
Refseq | XP_021306325.1 | 6e-78 | myb family transcription factor PHL12-like isoform X1 | ||||
TrEMBL | A0A1E5WBP8 | 1e-132 | A0A1E5WBP8_9POAL; Uncharacterized protein | ||||
STRING | Sb01g013080.1 | 2e-71 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15499 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.2 | 4e-14 | G2-like family protein |