PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000269.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 424aa    MW: 45764 Da    PI: 6.9053
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000269.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-32252307156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Do000269.1 252 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 307
                 79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.295249309IPR017930Myb domain
SuperFamilySSF466893.08E-17250310IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28250310IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-27252307IPR006447Myb domain, plants
PfamPF002491.9E-6254305IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEMDPPFLHA DRRRCREYLL ALEEERRKIQ VFRRELPLCL DLVTQTIEGM KSQMDGVGSE  60
ETVSDHGPVL EEFMPLKPSL SLSSSEEHDS AHDAAATTNG GVGKNEEAAE TPSPPTTETK  120
KQAPPDWLQS VQLWSQEPTH KVYSTAKLYV VWFVSFELPC KPVALNARKA GGAFQPFEKE  180
KRAELPASST TAAASSAVVE DDSCDKAGAT ESDTAAPENH SDKQEMNKDA KDKAGKDNKD  240
KADGQSQAAN RKPRRCWAPE LHRRFLQALQ QLGGSHVATP KQIRELMKVD GLTNDEVKSH  300
LQKYRLHTRR PNTTALQSTS PRAAPPAPQF VVVGGIWVPP PEYVAAAAAA AAAAAQPQVQ  360
LGAGDASGTA NTVYAPVATL PSGLRPRSLQ QGQRQSSRCS DGRRSGDASS DSPAVSSSSH  420
TTSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-13252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-13252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-13252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-13252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000269.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954868.30.0transcription factor NIGT1
SwissprotQ6Z8691e-131NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A1E5UQ020.0A0A1E5UQ02_9POAL; Myb family transcription factor EFM
STRINGSi019945m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.13e-61G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]