PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do000088.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 308aa MW: 34742.5 Da PI: 9.0736

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do000088.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	20	74	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Do000088.1 20 KPRLRWTPDLHQRFVDAVDKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 74 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-32	17	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.408	17	77	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.7E-25	20	75	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.79E-16	20	75	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-9	22	73	IPR001005	SANT/Myb domain
Pfam	PF14379	7.6E-7	118	145	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	1.5E-9	169	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MMEGSYGFGG GGGSMSRDPK PRLRWTPDLH QRFVDAVDKL GGPDKATPKS VLRLMGMKGL 60 TLYHLKSHLQ KYRLGRQGKK STRLELANGG GFATQSLSFP TPAPIPGVPA EGKNTGEMPL 120 ADALRYQIQV QRKLQEQLEV RQVLHHCHEL MHSQTFFHNT TSAYVCNQVQ KKLQMRIEAQ 180 GKYLKAMLEK AQRNISFDAN APSDNIESTR SQLMDFNLSL SGFMDNATRV CEENNEQLVK 240 AISDDNHKDN NLGFQLYQVE SQEAKEVKWT PKTEDSLQLD LNIKGRYDLS SRGMQACELD 300 LKMNQQII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do000088.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976682.1	1e-176	myb family transcription factor PHL11
TrEMBL	A0A1E5W6B0	0.0	A0A1E5W6B0_9POAL; Myb family transcription factor PHL11
STRING	Si010794m	1e-175	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	5e-59	G2-like family protein