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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Dca9643.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 229aa MW: 25079.4 Da PI: 10.2583 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Dca9643.1 | genome | DCA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 213 | 2.7e-65 | 42 | 229 | 111 | 301 |
GAGA_bind 111 lqqlsepqledsave......lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslD 204
q +++++e+ ++ +++ + ++++++ ++ +k+ k++kk+ ++ pke+k k++kk+s++s k+++ k+e+k+ D
Dca9643.1 42 FQGSHHHNTEEITTIptitipVNDAANAVEPELKTDKP-TKKPKSSKKNPKTDAPKEPKPKATKKSSSAS----LKPKT-GGLKRERKNATA---AGYDD 132
33333333333222110000022222222233222222.2233333333344444444444444422221....12221.235555555433...22336 PP
GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
s+ P CsCtG+ rqCY+WG+GGWqSaCCtt+iS yPLP+ ++r+g+R grKm +gaf klL++La+eGydl +++DLkdhWA+HGtnkfv i+
Dca9643.1 133 GSGTLSPFCSCTGVARQCYRWGSGGWQSACCTTNISEYPLPMRATRPGSRTPGRKMRHGAFVKLLQRLASEGYDLTTAIDLKDHWARHGTNKFVIIK 229
789999****************************************************************************************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MGTYGSNYPM ISEANEDTSA PHFAWFHPGN YMSAMRNGIN PFQGSHHHNT EEITTIPTIT 60
IPVNDAANAV EPELKTDKPT KKPKSSKKNP KTDAPKEPKP KATKKSSSAS LKPKTGGLKR 120
ERKNATAAGY DDGSGTLSPF CSCTGVARQC YRWGSGGWQS ACCTTNISEY PLPMRATRPG 180
SRTPGRKMRH GAFVKLLQRL ASEGYDLTTA IDLKDHWARH GTNKFVIIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
