PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca8766.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 727aa    MW: 79900.6 Da    PI: 5.6634
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca8766.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-1958113156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++e+e++F+++++p+ ++r+eL+++l+L+  q+k+WFqN+R+++k
  Dca8766.1  58 KKRYHRHTQHQIQEMENFFKECPHPDDKQRKELSRRLSLEPLQIKFWFQNKRTQMK 113
                688999***********************************************998 PP
2START207.93.8e-652524721206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela +a +el +++++++p+Wv s+     ++n++e+ ++f+++ +      ++ea+r s vv+m++++lve+l+d++ qW+  +     +a+tlev+s+
  Dca8766.1 252 ELAVAAIEELTRLVQSGDPLWVPSPdnstVILNEEEYFRTFPRGIGpmplgLRSEASRHSSVVIMNPVNLVEILMDVN-QWSCVFSgivsRAMTLEVLST 350
                578999*******************99999*************999********************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ p    + R++++pSg+li++++ng+skvtwvehv++++r +h++
  Dca8766.1 351 GvagnfnGALQVMTAEFQVPSPLVPtRENYFVRYSKQHGDGTWAVVDVSLDVLRPSP----IPRCRRRPSGCLIQELGNGYSKVTWVEHVEVDDRDVHNI 446
                *******************************************************99....6************************************** PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                +r lv++gla+ga +wv+tl+rqce+
  Dca8766.1 447 YRALVNTGLAFGATRWVSTLERQCER 472
                ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-1845115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2046113IPR009057Homeodomain-like
PROSITE profilePS5007116.50355115IPR001356Homeobox domain
SMARTSM003891.4E-1756119IPR001356Homeobox domain
CDDcd000862.72E-1858116No hitNo description
PfamPF000461.2E-1658113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PROSITE profilePS5084845.064243475IPR002913START domain
SuperFamilySSF559611.44E-38243473No hitNo description
CDDcd088752.60E-125247471No hitNo description
SMARTSM002341.5E-67252472IPR002913START domain
PfamPF018521.4E-54253472IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-5308471IPR023393START-like domain
SuperFamilySSF559612.2E-26494718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MFQPNMFETH HSLLDMASHK DFELGKMNND EFESSRSVTE NLEGVSGDDQ DPNQRPKKKR  60
YHRHTQHQIQ EMENFFKECP HPDDKQRKEL SRRLSLEPLQ IKFWFQNKRT QMKAQHERSE  120
NQQLRSENDK LRADNIRFKE ALSNATCPNC GGPAAIGEMS FDEQQLRIEN ARLREEIDRI  180
SSIAAKYVGK PLMTYPHLSP TLTSRSSFDL GVGGTLAPQS TLVGGGDMYA SAGDILRAIA  240
PPTEADKPMI IELAVAAIEE LTRLVQSGDP LWVPSPDNST VILNEEEYFR TFPRGIGPMP  300
LGLRSEASRH SSVVIMNPVN LVEILMDVNQ WSCVFSGIVS RAMTLEVLST GVAGNFNGAL  360
QVMTAEFQVP SPLVPTRENY FVRYSKQHGD GTWAVVDVSL DVLRPSPIPR CRRRPSGCLI  420
QELGNGYSKV TWVEHVEVDD RDVHNIYRAL VNTGLAFGAT RWVSTLERQC ERLACVMANN  480
IPAGEAGVIT SLEGRKSMLK LAERMVLSFC AGVGASTAHT WTTLSGSGAD DVRVMTRKSM  540
DDPGRPPGIV LSAATSFWMP VPPKRVFDFL RDENSRSEWD ILSNGGLVQE MAHIANGKDP  600
GNCVSLLRVN SANSSQSNML ILQESSTDTT GSYVIYAPVD VVAMNVVLNG GDPDYVALLP  660
SGFAILPDGS TPMEDGSGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKAA  720
VSCDQTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021766927.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
RefseqXP_021766928.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A0K9R0U50.0A0A0K9R0U5_SPIOL; Uncharacterized protein
STRINGXP_010665524.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]