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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca8764.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 27285.6 Da PI: 5.5856 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 48.5 | 2.9e-15 | 88 | 183 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+++++ +GFs+rk + + + +t+r f Cs++g++ + +++ + ++++ tr +Cka ++ +++ g wev + eHnH+l+p Dca8764.1 88 EMYKKHSQVMGFSTRKGTILRVsGVGTPVTQRYFLCSCQGEHGNGSRRglkgVSVQQKNALITRSECKAWIRTLLNEAGLWEVVDHIIEHNHPLTP 183 58**************9987763677889*************9999999998788889999********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-12 | 88 | 183 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSNNKTKTID LFEIENVIDL EKDASENVID LEKDAPEEDV FEGGSDDNPV DKERDEVGVD 60 DNLGDMKDFD FSRSLVGVKA KSSEDLYEMY KKHSQVMGFS TRKGTILRVS GVGTPVTQRY 120 FLCSCQGEHG NGSRRGLKGV SVQQKNALIT RSECKAWIRT LLNEAGLWEV VDHIIEHNHP 180 LTPPQWQHHH RLERRISEAE GEVIKAMTET LVAPSVQFRV ASAVASGDTL VGHTKRDHIK 240 LIY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-10 | FAR1-related sequence 5 |