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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca8459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 881aa MW: 97722.8 Da PI: 7.7177 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.6 | 5.9e-22 | 789 | 869 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +ev++Li++r e+++r++ +k +++lWee+s+ + + gf+r+p qCk+ w +l ++y++ k+ ek++ +++py++q++ Dca8459.1 789 RWKPEEVKKLIKLRGELHDRFQVAKGRMALWEEISSSLLSDGFNRTPAQCKSLWASLVQKYEESKNDEKSN-----TNWPYYEQMN 869 8********************************************************************95.....58*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 6.7E-67 | 74 | 324 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 1.98E-71 | 75 | 489 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 3.0E-24 | 87 | 284 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 1.1E-10 | 99 | 234 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 8.7E-8 | 430 | 461 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 8.293 | 782 | 846 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-6 | 784 | 848 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0038 | 786 | 848 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.0E-18 | 787 | 870 | No hit | No description |
CDD | cd12203 | 4.73E-23 | 788 | 853 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 881 aa Download sequence Send to blast |
MAAFTCISIC PCLSYRPNLV KRYISCSLRP PAVGTSASKV PRRRSGRLEG PSKSMEDSVK 60 RKMEQFYEGS TGPPLRVLPI GGLGEIGMNC MLVGNYDRYI LIDAGIMFPD FDEFGVQKII 120 PDTTFIKRWS HKIEAVIITH GHEDHIGALP WVIPALDPKT PIFASSFTME LIKKRLKEFG 180 IFVPSRLKIF RTRKRFAAGP FEIEPVRVTH SIPDCSGLVM RCADGTIFHT GDWKIDESPV 240 DGKNFDREAL EELSKEGVTL MMSDSTNILS PGRTISESVV ADSLLRQISE AKGRVITTQF 300 ASNIHRLGSV KAAADATGRK LVFVGMSLRT YLDAAWKDGK APIDPSSLVK VEDIDSYAPR 360 DLLIVTTGSQ AEPRAALNLA SYGSSHSLKL SKEDVILYSA KVIPGNETRC MKMFNRIAEL 420 GSTLIMGKNE MLHTSGHAYR EELAEVLKIV KPQHFLPVHG ELLFLKEHEL LGKSTGVHHT 480 TVIKNGEMLG VSHLRNRRVL SNGFISLGKE NLQLMYNDGD KAFGTSAELC IDERMKIASD 540 GIIVISMEIL RPGAVEGFTE NCLKGKIRIT TRCLWLDKGK LLDALHKAAH ASLSSCPVNC 600 PLSHMERTVS EMLRKVVRKY SGKRPEIIAI ATENPAAVLS DEVNERLSGK SRPRIGISAL 660 RKTVDGHYKT KKTDIVDDQD DDLVSEATTS QLDSEDGNEF DGLLTKEDDD KAASNIARSS 720 DKSQDLNDTW KSFFASTSLP KDEIDENNAA SGLLEQNVGK ITGKEVNKDE SSELPSSPSE 780 ALKSTKRNRW KPEEVKKLIK LRGELHDRFQ VAKGRMALWE EISSSLLSDG FNRTPAQCKS 840 LWASLVQKYE ESKNDEKSNT NWPYYEQMNT ILSNLGEVSD S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 1e-83 | 75 | 633 | 19 | 560 | RIBONUCLEASE J |
5a0t_B | 1e-83 | 75 | 633 | 19 | 560 | RIBONUCLEASE J |
5a0v_A | 1e-83 | 75 | 633 | 19 | 560 | RIBONUCLEASE J |
5a0v_B | 1e-83 | 75 | 633 | 19 | 560 | RIBONUCLEASE J |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010677898.1 | 0.0 | PREDICTED: uncharacterized protein LOC104893494 isoform X1 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A0K9QP06 | 0.0 | A0A0K9QP06_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677898.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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