PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7775.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 372aa    MW: 42026.8 Da    PI: 4.9808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7775.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-0690113226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                k  lC ff + G+C  G +CkF+H+
  Dca7775.1  90 KSILCEFFKA-GQCTKGFKCKFSHD 113
                6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.39488115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-688113IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-588114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-490114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.498159197IPR000571Zinc finger, CCCH-type
SMARTSM003562.9159196IPR000571Zinc finger, CCCH-type
PfamPF165434.7E-17216297IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MPPKQQPSKA DLAKKQKLVE DKTFGLKNKN KSKNVQKYVQ NLKQSVQPKA DPKKDAKKKK  60
EEEKAREKEL NDLFKIAVTQ PKVPIGVDPK SILCEFFKAG QCTKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DDEGTMEDWD QEMLEKAIAE KSKEYQQNKP TEIVCKHFLD AVEKKQYGWF  180
WVCPNGGKNC HYRHALPTGY ILKSQMKALL EEESEKMAIE DEIEDQRSKV KGSTPMTPEL  240
FAQWKKKKLD EKAASVASQT AERAKNDRLS GRELFMSDAS LFVDHAEAWD NYERDESQDN  300
EAQANEKPGG ADGSSSSSHV NPDAPSSSGT ANGDDDDIPD DIDDDLDDDE LEELEASLSR  360
TSIQINEPNT SA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696358.10.0PREDICTED: zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ21e-176C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A0J8E1P00.0A0A0J8E1P0_BETVU; Uncharacterized protein
STRINGXP_010696358.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-155C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]