PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Dca7705.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 705aa MW: 81460.8 Da PI: 7.4091

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca7705.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.5	1.8e-07	98	189	4	90
FAR1 4 neYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YA + GF+v ++++ + + + ++r+f +ke + + ++ + ++ +++++ tgCka ++ e ++ +++++++l+HnHel Dca7705.1 98 FTYAMKKGFEVFTRSNVINpEYKAAGVSREFGGKKEPRYHMMDRLrlackKGGRKCSENSNVTGCKAVFEGAVE-NDGFQIKSVRLDHNHELD 189 58*******99998887555555688888888877776666658888666677799999*****9999.999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-5	98	190	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-22	310	393	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.695	530	566	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-5	532	559	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.0E-4	541	568	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MSSNNGGLFD LNEYFDEDFD GNYVFDEEIE ANEVHNDGRS VESVQNSIDE VGSTEESPNL 60 VQQAVNVVEA ENLNNEDIVE PKVGIIFPNC ESFDAFIFTY AMKKGFEVFT RSNVINPEYK 120 AAGVSREFGG KKEPRYHMMD RLRLACKKGG RKCSENSNVT GCKAVFEGAV ENDGFQIKSV 180 RLDHNHELDP ANSRFTISAR IITDYFKKRI LLNDRAGIPI TKNFNAMVLE AGGHENLPFN 240 RRDLRNLVNL ERRLERINGD AAALEEYFVK MKTDNPDFFY AIKKDNEGRL QNVFWVDARC 300 RAMFKVFGDV VTYDTIFLCN RYRLPFSPFI GVNHHGNSIC FAAALITNED TDTFIWVFER 360 WLECMGKAPP VILSDQDKAI GKAIETVFPA VVHDTLSEEK FEQSWSVMVD KFGVHDNVWI 420 KEAYNIRKRL ETGLRNFMTQ FDLAQQCKVE DERTQNFICK DRPLPYDKSI LVEEVFSKLY 480 TNEKFKEVKE QVYAGIRTFI ELVMRMGSYV VYKAEEQIVQ PFWKEGFRTY EVTIDKDMGV 540 FKCSCQLFEF KGILCKHIIQ CIVKENIKSI PETYILDRWR KDLIRGYEHI RFGYYNPEEV 600 KSVKRAMKLE NIVGIETVRS TLDANGILKV VGRRRVQPRE CNMRLIARNT TQRSNSQLKD 660 PIDKRGTGRG PKLKQTTNRK RKGGDIPQSP LSQRSRVSSE LELFR

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MSSNNGGLFD LNEYFDEDFD GNYVFDEEIE ANEVHNDGRS VESVQNSIDE VGSTEESPNL  60
VQQAVNVVEA ENLNNEDIVE PKVGIIFPNC ESFDAFIFTY AMKKGFEVFT RSNVINPEYK  120
AAGVSREFGG KKEPRYHMMD RLRLACKKGG RKCSENSNVT GCKAVFEGAV ENDGFQIKSV  180
RLDHNHELDP ANSRFTISAR IITDYFKKRI LLNDRAGIPI TKNFNAMVLE AGGHENLPFN  240
RRDLRNLVNL ERRLERINGD AAALEEYFVK MKTDNPDFFY AIKKDNEGRL QNVFWVDARC  300
RAMFKVFGDV VTYDTIFLCN RYRLPFSPFI GVNHHGNSIC FAAALITNED TDTFIWVFER  360
WLECMGKAPP VILSDQDKAI GKAIETVFPA VVHDTLSEEK FEQSWSVMVD KFGVHDNVWI  420
KEAYNIRKRL ETGLRNFMTQ FDLAQQCKVE DERTQNFICK DRPLPYDKSI LVEEVFSKLY  480
TNEKFKEVKE QVYAGIRTFI ELVMRMGSYV VYKAEEQIVQ PFWKEGFRTY EVTIDKDMGV  540
FKCSCQLFEF KGILCKHIIQ CIVKENIKSI PETYILDRWR KDLIRGYEHI RFGYYNPEEV  600
KSVKRAMKLE NIVGIETVRS TLDANGILKV VGRRRVQPRE CNMRLIARNT TQRSNSQLKD  660
PIDKRGTGRG PKLKQTTNRK RKGGDIPQSP LSQRSRVSSE LELFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-61	FAR1-related sequence 5