![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca7070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 392aa MW: 43098.8 Da PI: 8.3867 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.7 | 4.7e-24 | 88 | 132 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e Dca7070.1 88 DAEPGRCRRTDGKKWRCSRDVAPNSKYCERHMHRGRPRSRKHVEH 132 79****************************************985 PP | |||||||
2 | QLQ | 55.3 | 2e-19 | 22 | 52 | 2 | 32 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 aFTaaQ+ +L++Q+++yKy++a++PvPp+Ll Dca7070.1 22 AFTAAQWKELERQAMIYKYMMASLPVPPQLL 52 8****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.4E-10 | 21 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.1E-14 | 22 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.883 | 22 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.366 | 88 | 132 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.7E-20 | 89 | 131 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 392 aa Download sequence Send to blast |
MTTTTGGGGG VGGGGIGVGG YAFTAAQWKE LERQAMIYKY MMASLPVPPQ LLYSSNYSPN 60 YSTFTPASYF MGKYGSEFSV KWSGNNKDAE PGRCRRTDGK KWRCSRDVAP NSKYCERHMH 120 RGRPRSRKHV EHQLLRQDNQ PQSLSNLPIN NDTTTTNNNN NNISVKAIKG NVTKKTRMND 180 PSVGPCNVPS SKGLIFDQSV VSNSITFEDS RNLTWSDEQQ WHQLMQSNIN SSVFPHQLEG 240 HASNLNSTGG LITKTDMGLL ERPLFDAWST GVAETKDNRE NNHNNKFPNS SSNLVDDEMC 300 HIHMGLGLID SWVTSSTTPG GPLAEVLRPG IPSMSDITPP ATAVSSPSGV LQKTLATFSD 360 SSGSNSPVCH HHHHHHHNSN VTSDMLPFNW LN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010666149.1 | 1e-148 | PREDICTED: growth-regulating factor 7 | ||||
TrEMBL | A0A0J8B8Z5 | 1e-147 | A0A0J8B8Z5_BETVU; Uncharacterized protein | ||||
STRING | XP_010666149.1 | 1e-148 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53660.1 | 4e-41 | growth-regulating factor 7 |