PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Regulation |

Basic Information? help Back to Top

TF ID

Dca6677.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 487aa MW: 55575.2 Da PI: 7.9613

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca6677.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.9	2.9e-07	64	145	8	90
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + + F ++ks++k + g+ + +C + gk + k+ + +r+++++++++C k+k+ +dgk+ v+ + HnHe+a Dca6677.1 64 HGLDFGLCKSSNKPR---GTKEYHLIKCERGGKYNGPFKDpfMVPKRKKTTSKKIECPFKIKIVSGTDGKFAVMPMYGFHNHEMA 145 555677777766655...545678889****99998888999*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MSTTGDYDFN DGDYEVDDQS GLGDDNISVD ALIGDGIDYS FHFMNILCFQ NMKMAYTWAQ 60 AIAHGLDFGL CKSSNKPRGT KEYHLIKCER GGKYNGPFKD PFMVPKRKKT TSKKIECPFK 120 IKIVSGTDGK FAVMPMYGFH NHEMANYFDG HRQMTSFSDE QKDYVRVNVV SEIKTANIRL 180 GFKEKYPDQP QPNKRQFDSV VAKWVWICIY YVARSSCACA LHALLACDGN VFVDHVHPFW 240 RTLDYGEGDG LSSVCTDIDL FDATFEAARC QPAPVRRMII ETANQILHPD LSGVGDPIVK 300 ERPNGRSKIG NSTQRNPSQF EHTHSKYPVA PERRDRTGNA LSTKNVGGPW ECDYVDAEGS 360 QFYYIYLVPP LLLEYLVGWF DPHADGHCGF RIFAHAMRKD QDEWRAMRWA LLCEFRNPMY 420 RTIYPGDYEA GRVLPRIHFE GNCGTREPRQ GTQLGVLLKG RILKLKKIKL EKPLRTVMES 480 PPNYRGN

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MSTTGDYDFN DGDYEVDDQS GLGDDNISVD ALIGDGIDYS FHFMNILCFQ NMKMAYTWAQ  60
AIAHGLDFGL CKSSNKPRGT KEYHLIKCER GGKYNGPFKD PFMVPKRKKT TSKKIECPFK  120
IKIVSGTDGK FAVMPMYGFH NHEMANYFDG HRQMTSFSDE QKDYVRVNVV SEIKTANIRL  180
GFKEKYPDQP QPNKRQFDSV VAKWVWICIY YVARSSCACA LHALLACDGN VFVDHVHPFW  240
RTLDYGEGDG LSSVCTDIDL FDATFEAARC QPAPVRRMII ETANQILHPD LSGVGDPIVK  300
ERPNGRSKIG NSTQRNPSQF EHTHSKYPVA PERRDRTGNA LSTKNVGGPW ECDYVDAEGS  360
QFYYIYLVPP LLLEYLVGWF DPHADGHCGF RIFAHAMRKD QDEWRAMRWA LLCEFRNPMY  420
RTIYPGDYEA GRVLPRIHFE GNCGTREPRQ GTQLGVLLKG RILKLKKIKL EKPLRTVMES  480
PPNYRGN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-