PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61903.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 261aa    MW: 28046.3 Da    PI: 7.9176
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61903.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.2e-20141175135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 CsnC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Dca61903.1 141 CSNCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 175
                 ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-19135186IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14138177No hitNo description
PROSITE profilePS5011413.903138171IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.7E-17139175IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.74E-13140172No hitNo description
PROSITE patternPS003440141166IPR000679Zinc finger, GATA-type
PfamPF003205.2E-18141175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVGPCSYCGP YAQYCGHQAA YYWPPGAVQY GGDNNSDFNS SSSYASSSSP PVDCTLSLGT  60
PSTRLSNVDS DTHYADTTTT SSTNTTTTKH RSSVSSFCWD LLHPSSNKHS SSSTPKSSST  120
RNNNGNGNGS GGGDPLFARR CSNCDTTSTP LWRNGPRGPK SLCNACGIRF KKEERRAAAA  180
TTTAVNTNAV SGTGLIDPHQ GYYNGGWAHQ YSQGAPQKIQ CYGTPNEFRF MDDDRGSESG  240
IQFLSWLTHD RPSGLVHDFT R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718016.11e-108GATA transcription factor 19-like
SwissprotQ8LC792e-44GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A0K9S0Y45e-97A0A0K9S0Y4_SPIOL; Uncharacterized protein
STRINGXP_010679730.13e-99(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.16e-36GATA family protein
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]