PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61124.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 305aa    MW: 34323.4 Da    PI: 4.8858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61124.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.2e-14105153254
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                 +++GVr++k +g+W+AeIr+p    +r  r++lg++ t++eA + ++  + ++e
  Dca61124.1 105 KCRGVRQRK-WGKWAAEIRHP----IRgVRIWLGTYETEKEAIEVYELKKMEFE 153
                 79******9.**********7....246**********99****9998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.1E-13105167IPR001471AP2/ERF domain
PROSITE profilePS5103218.123105164IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-14105152IPR016177DNA-binding domain
PfamPF008477.1E-8106153IPR001471AP2/ERF domain
PRINTSPR003678.1E-7106117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-18107152IPR001471AP2/ERF domain
CDDcd000187.25E-18107145No hitNo description
PRINTSPR003678.1E-7128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MLDENRFHQN SKVTAMKSVR KVRVIYHDPD LTDSSSDDEM RDYTRERSKK RFVREIILPL  60
SPSGSAKNQD VGVESSCHEN NFGIKNTDKK KRVLASDPKK PASGKCRGVR QRKWGKWAAE  120
IRHPIRGVRI WLGTYETEKE AIEVYELKKM EFEALVAAKT QNVSASEDSQ SAALSRNNSP  180
NCSYSQTNAA TNVGTKKLES SEVNRTEVKV DMIPVLNATE EEIIQCEISQ GLDLDMELGS  240
SFLLNDFGDL FNEFPSFDNL LGSGFDSVEP TDVLDFDFEL GNNELAWIEE PLKFAAATTC  300
CSQFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681556.11e-83PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_010681557.11e-83PREDICTED: ethylene-responsive transcription factor ERF118
STRINGXP_010681556.16e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-31ERF family protein