![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca61123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 389aa MW: 44117.1 Da PI: 8.5705 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.1 | 2.1e-17 | 145 | 177 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++C + kTp+WR+gp g ktLCnaCGl y+k Dca61123.1 145 CVHCDSAKTPQWRNGPMGRKTLCNACGLQYKKG 177 *******************************95 PP | |||||||
2 | GATA | 55.7 | 6.7e-18 | 199 | 231 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++C + +Tp+WR gp g+ktLCnaCG+ y+k+ Dca61123.1 199 CVHCESASTPQWRDGPLGPKTLCNACGIQYKKR 231 *******************************96 PP | |||||||
3 | GATA | 56.7 | 3.2e-18 | 311 | 344 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tt+Tp+WR+gp g ktLCnaCG+ yr + Dca61123.1 311 CAHCETTTTPQWREGPLGRKTLCNACGVQYRNGR 344 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.899 | 139 | 175 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.3E-15 | 139 | 189 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-12 | 140 | 178 | No hit | No description |
CDD | cd00202 | 4.51E-12 | 144 | 199 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.9E-15 | 144 | 177 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 145 | 170 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.1E-15 | 145 | 177 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.0E-12 | 191 | 236 | No hit | No description |
SMART | SM00401 | 2.2E-14 | 193 | 243 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.543 | 197 | 229 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.84E-11 | 198 | 249 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.3E-14 | 198 | 231 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.6E-15 | 199 | 231 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.2E-15 | 305 | 359 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.833 | 305 | 341 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.13E-13 | 305 | 356 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-14 | 308 | 344 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.15E-13 | 310 | 359 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 311 | 336 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.6E-16 | 311 | 344 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MDSPEKKHEK LPIDLNKSGE EVNMEIVNQY GQLMGDFSKL DDELWLAPPA HDESLGFCSE 60 GLEWKIVSSH PHERTTEQVN NSVFDEGLVS MENNSSSNDS SQNCSSSVSP VSILRGRLVK 120 TRKIADLLQL NPMEKNPPAK LVKKCVHCDS AKTPQWRNGP MGRKTLCNAC GLQYKKGLLS 180 DYHRPLQTIK PQTEVIKKCV HCESASTPQW RDGPLGPKTL CNACGIQYKK RLLSPDYRPI 240 RNPRRNTSPP LEPAKNSSCD PYQKKDEEIM LSEKTEIDRN YTSDADDSSS DTDFKPTTRK 300 KRQPVVVDKK CAHCETTTTP QWREGPLGRK TLCNACGVQY RNGRLFPEYR PLQSPSYDPS 360 VHSHLPKKVE QMRMQKLRMM ERAIFGTDI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28340.1 | 2e-27 | GATA transcription factor 13 |