PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Dca60105.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 696aa MW: 79322.4 Da PI: 7.2606

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca60105.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.5	1.9e-17	184	279	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA +GF+ r +s+++ r + +++ +vC+++g+re+ +k ++ +rr+ + tr+gCka+++ + dg + v ++++ HnH l+ Dca60105.1 184 SFYRAYAFACGFTPRLYTSRHR-RGRVLKNKILVCNRQGFRENPQKLrdpscvesKKVRRRKVKITRVGCKACINFCLV-DGAFTVVEFHESHNHRLF 279 5**************99987.7888999*********99999*987888889999*********9.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-13	184	279	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.5E-33	401	493	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MVVNGGRSDS GGDLGDGTTR RGNGGGGGSR DGGGGGGDDG GGVVPVEAVV GCCGGRKWDG 60 TVVVSVVGVV VDEEDPWNYH LIYTELICRE DVEDEQPLEK IAVRFEVETM IDSQPQNGDT 120 ISGSKSGQSV PLTPTKQSVS SIPGQYPLVL SHTPGGSEEW VRRVERQFMP SVGKVFPSLD 180 EAVSFYRAYA FACGFTPRLY TSRHRRGRVL KNKILVCNRQ GFRENPQKLR DPSCVESKKV 240 RRRKVKITRV GCKACINFCL VDGAFTVVEF HESHNHRLFS ANERDFEKVS RNLTLFHKQL 300 IVDHLKLNIG ASKSFRICKE YVNGYSNVGA SLLDFKNFQR DIKCFIGEKD AQLFIDRFQM 360 MSESKRGFFF SYHVDDSTSL SRVFWSDAEA IRNYSLFGDA ISFDPTYGTN KYSMVFTPFT 420 GVDHHKKSVF FGACLLSNED ENSFRWCFEK FLEAMGQKEP QIIITDQDPA IKKAVQSVFV 480 KARHRFCIWH IMEKLNDKVG SSICRDTDFL SRLHSIVWDA ELDPSDFEQK WTQVINDFEM 540 GDHSWLSSMF SLRQFWIPAY HRDLPMGCIL RTTQRSESQN SFFKRYENHF GTLVEFWMRF 600 QTALDQQRYS QRRADNDSDH ALPILISPLP LESHAFRVYT HPIFYEFQEE VKASISSCSV 660 AGFTKNNEEE RMDVEDAERN KTYQVSVFKA YRKSTF

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MVVNGGRSDS GGDLGDGTTR RGNGGGGGSR DGGGGGGDDG GGVVPVEAVV GCCGGRKWDG  60
TVVVSVVGVV VDEEDPWNYH LIYTELICRE DVEDEQPLEK IAVRFEVETM IDSQPQNGDT  120
ISGSKSGQSV PLTPTKQSVS SIPGQYPLVL SHTPGGSEEW VRRVERQFMP SVGKVFPSLD  180
EAVSFYRAYA FACGFTPRLY TSRHRRGRVL KNKILVCNRQ GFRENPQKLR DPSCVESKKV  240
RRRKVKITRV GCKACINFCL VDGAFTVVEF HESHNHRLFS ANERDFEKVS RNLTLFHKQL  300
IVDHLKLNIG ASKSFRICKE YVNGYSNVGA SLLDFKNFQR DIKCFIGEKD AQLFIDRFQM  360
MSESKRGFFF SYHVDDSTSL SRVFWSDAEA IRNYSLFGDA ISFDPTYGTN KYSMVFTPFT  420
GVDHHKKSVF FGACLLSNED ENSFRWCFEK FLEAMGQKEP QIIITDQDPA IKKAVQSVFV  480
KARHRFCIWH IMEKLNDKVG SSICRDTDFL SRLHSIVWDA ELDPSDFEQK WTQVINDFEM  540
GDHSWLSSMF SLRQFWIPAY HRDLPMGCIL RTTQRSESQN SFFKRYENHF GTLVEFWMRF  600
QTALDQQRYS QRRADNDSDH ALPILISPLP LESHAFRVYT HPIFYEFQEE VKASISSCSV  660
AGFTKNNEEE RMDVEDAERN KTYQVSVFKA YRKSTF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	243	KKVRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-75	FAR1-related sequence 5