PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57948.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 628aa    MW: 70404.4 Da    PI: 5.4686
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57948.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23123223198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k lt sd++++g +++ +k+a+e+       +  ++ +++l  ed++g +W++k+i+r++++r++lt+GW++Fv +++L +gD++vF   + +++el
  Dca57948.1 123 FSKPLTASDTSTHGGFSVLRKHANEClppldmtQ--QTPTQELAAEDLHGYVWRFKHIFRGQPRRHLLTTGWSHFVTSKRLVAGDSFVFL--RGESGEL 217
                 889***************************9643..445569************************************************..449999* PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 +v+v+r
  Dca57948.1 218 RVGVRR 223
                 ****98 PP
2Auxin_resp99.16.3e-33249328183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F++ ++k+++++++ ++vG Rfkm+fe+ed++err++Gtvvgv dl+p +W++S+WrsLk
  Dca57948.1 249 ASHAITTHTFFVVYYKPRM--SQFIIGLNKYLESVNNGFTVGVRFKMRFEGEDAPERRFTGTVVGVDDLSP-QWKDSRWRSLK 328
                 789***************7..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-40116238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-38118252IPR015300DNA-binding pseudobarrel domain
CDDcd100176.50E-20121223No hitNo description
SMARTSM010192.5E-21123225IPR003340B3 DNA binding domain
PfamPF023623.4E-21123223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773123225IPR003340B3 DNA binding domain
PfamPF065071.0E-29249328IPR010525Auxin response factor
PfamPF023091.3E-12494603IPR033389AUX/IAA domain
SuperFamilySSF542775.98E-12510589No hitNo description
PROSITE profilePS5174525.11513594IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MSNTMPYSLR DSGEVDVLYS ELWKACAGPL VEIPRLGERV YYFPQGHMEQ LEASTNEEVN  60
ERMHMFNLSS KILCRVMDIV LLAEKETDEV YAQITLMPET DQTEPTKPDP CPPETPRPVV  120
RSFSKPLTAS DTSTHGGFSV LRKHANECLP PLDMTQQTPT QELAAEDLHG YVWRFKHIFR  180
GQPRRHLLTT GWSHFVTSKR LVAGDSFVFL RGESGELRVG VRRVARQQSN MPSSVISSQS  240
MHLGVLATAS HAITTHTFFV VYYKPRMSQF IIGLNKYLES VNNGFTVGVR FKMRFEGEDA  300
PERRFTGTVV GVDDLSPQWK DSRWRSLKVQ WDEPTSIPRP DRVSPWEIEP FGASPNTTDA  360
IISNKKLRPS IEVPIRGESM STNDSLLWNT PTGVAQNEVE DCKTATAWSV FSGYSTPIAQ  420
KQSEDQNGIT RKTETVPSCR LFGIDLMVPT TPINREGALE QDLNMTRVSA VEQGPSSDSA  480
VDSDQSKASQ EKRQSIQLNS TREMQIKSTS SARSRTKVQM QGVAVGRAVD LATLDGYDQL  540
LDELEDLFDI KGEMRSRGKW EVVFTDNEGD MMLVGDDPWP EFCNMAKKMY ICSSEELKKM  600
KPRTKMGTSS IEGEGTAVSF ETSGNSTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1691635317357Auxin response factor 1
4ldw_A1e-1691635317357Auxin response factor 1
4ldw_B1e-1691635317357Auxin response factor 1
4ldx_A1e-1691635317357Auxin response factor 1
4ldx_B1e-1691635317357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864622.10.0auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0K9RYM00.0A0A0K9RYM0_SPIOL; Auxin response factor
STRINGXP_010695583.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9