PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NF-YA

Protein Properties

Length: 225aa MW: 25151.1 Da PI: 10.7463

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca57298.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95.8	4.9e-30	63	119	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Ra++e ek++ + +rkpylheSRhkhAlrR+Rg gGrF Dca57298.1 63 EEPVYVNAKQYRGILRRRQIRARAELEKRV-IGNRKPYLHESRHKHALRRARGAGGRF 119 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.9E-34	61	122	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.876	62	122	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.5E-26	64	119	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-22	65	87	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-22	96	119	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDTAAQGRRS DSLIGFIGNS ILFTSQPLQD ATYGGIVAYA QQVNTQQYGV QHNRMPLPLV 60 TEEEPVYVNA KQYRGILRRR QIRARAELEK RVIGNRKPYL HESRHKHALR RARGAGGRFL 120 NTKKVNENND SNSEEVNANS KFERMTSDLT FSAYGAKDNA SWNQKQTRGM LISDKRKGAL 180 ESSSSGGSAV HGLPSIHHSL SSASSDRIDE YGRRQLKMNG FVSVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-18	63	126	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	112	RHKHALRRAR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695208.1	4e-71	PREDICTED: nuclear transcription factor Y subunit A-4
Swissprot	Q84JP1	3e-35	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
Swissprot	Q9LXV5	6e-35	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A0K9Q944	2e-64	A0A0K9Q944_SPIOL; Uncharacterized protein
STRING	XP_010695208.1	2e-70	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	8e-15	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]