PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56351.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 538aa    MW: 59508.6 Da    PI: 7.5655
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56351.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.42.6e-15741135
        GATA  1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkgl 35
                C +Cg+ +TplWR+gp d+++ LCnaCG ++r kg+
  Dca56351.1  7 CYHCGVASTPLWRNGPpDKPI-LCNACGSRWRTKGT 41
                ****************77777.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.04E-11446No hitNo description
CDDcd002021.64E-15651No hitNo description
Gene3DG3DSA:3.30.50.107.0E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.976740IPR000679Zinc finger, GATA-type
PfamPF003203.4E-13741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGKHGPCYHC GVASTPLWRN GPPDKPILCN ACGSRWRTKG TLINYTPLHS RVDPDDSEEQ  60
RALRLKSISL KKKDEKLYKR KLNYENTMAM DGEFTPDYGH GYQKNIDEDT SNRSSSGSAV  120
SNSESYAQFG SADAGELTGP SQSIVWDALI PSRKRTCVIR AKQSSVEKLT KDLHTILHEQ  180
ASQFSRSSEE DLLYESDAPM VSVEIGHGSV LIRHPSSMAR EEESEASSLS VDTKLCKSDE  240
RRSNAVSLPL LNDSKVVKTS VSRVEDVRKL NGQIVQLGQL QKDKHNHEKF QVLCNHNSPL  300
SHIDLTEIAN FDVFRGHLTA TEQQGLLKHL PSVDTSVGSN SLENMFTSAQ IKENLSSFQQ  360
LLTDGVLETS TPGIKTDDCK DLRRLALSNP SKCKWVERYN ILKQKGAEES TKERPSKSGA  420
KSGFSGTVLS ATRFRENHNH TGNELKCTMK SPKIVLPKVD YKQKAPLQNE PSYFASRSAF  480
SFPTDASSLL LDPEDDQDIL LDIPSNGSFP QAELLCPTSS FVSRQASTSS SSIRPSLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021765789.10.0GATA transcription factor 26-like
TrEMBLA0A0K9R9670.0A0A0K9R967_SPIOL; Uncharacterized protein
STRINGXP_010677131.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-114GATA transcription factor 26