PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55722.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CO-like
Protein Properties Length: 396aa    MW: 43736.4 Da    PI: 6.0514
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55722.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.1e-062264238
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                ++r+C+ ++e  +  +C+ ++  lC +C  + H        Ht
  Dca55722.1 22 QKRTCDFCGESVALVYCRADSAKLCLSCDRQVHTTnqlftkHT 64
                789********9*******************995566776676 PP
2zf-B_box28.33.5e-0968108542
    zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvvpl 42 
                  C+ +++ ++++fC+++++ lC++C   +H+g   H+++pl
  Dca55722.1  68 LCDSCDSSPASIFCFTDRSVLCHNCDYDSHSGscdHDRRPL 108
                 6*****************************98999*99886 PP
3CCT621.9e-21349391143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 R +a++RYkeK++tR+FeK+irYesRK  Ae+R RvKGrF+k 
  Dca55722.1 349 RVNAVSRYKEKKRTRRFEKHIRYESRKLQAENRTRVKGRFAKM 391
                 889**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.4E-152168IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1392168IPR000315B-box-type zinc finger
PfamPF006434.3E-52264IPR000315B-box-type zinc finger
CDDcd000218.82E-72468No hitNo description
PROSITE profilePS5011911.33464108IPR000315B-box-type zinc finger
PfamPF006431.2E-668108IPR000315B-box-type zinc finger
CDDcd000211.24E-668108No hitNo description
SMARTSM003360.04769108IPR000315B-box-type zinc finger
PfamPF062033.9E-15349391IPR010402CCT domain
PROSITE profilePS5101714.624349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MPNSPANHKQ SSPQKNSNPK TQKRTCDFCG ESVALVYCRA DSAKLCLSCD RQVHTTNQLF  60
TKHTRFLLCD SCDSSPASIF CFTDRSVLCH NCDYDSHSGS CDHDRRPLEG FNGRPSAVEL  120
AVSVGLQGFD CKTAVVGVED GGGGGGGFGG EFLGGFEEVS DDGFCEFFGW DAPSVVNLDD  180
LIGSTDKSHG FHAMVVPPLP KDRNSSCGQH KQEILRQLCE LAKSEPFVNH ESDRLVGHCI  240
EAEENEDFSV KHQVLSYGHD EQHSVLRGDE ARACSWSNNG NEVVNDVCLS PWLTEIDFEE  300
STLNFETKPD TCGKPSHDTT GCNVEIPVAA ESTSLPPKVS SHEFSAADRV NAVSRYKEKK  360
RTRRFEKHIR YESRKLQAEN RTRVKGRFAK MDSRAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021763086.11e-152zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A0K9RM821e-146A0A0K9RM82_SPIOL; Uncharacterized protein
STRINGXP_010696415.11e-128(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-78B-box type zinc finger protein with CCT domain