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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca5358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 732aa MW: 84398.5 Da PI: 8.1132 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.4 | 1e-17 | 46 | 139 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY+ YA +GF+vr ++k+ +g+i ++ vC++eg+ e++kkk + + r+++++r+gC+a++++ + +g+ v++++++HnHel+ Dca5358.1 46 KFYKIYAIACGFDVRLWTQKRW-GDGTIQSKLIVCNREGFWESKKKKknegcdSITDGRRTKTHRIGCRARMRMWVM-NGVVTVDTFNENHNHELV 139 6***************998887.8899*************999999977887755666788999************9.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.2E-14 | 46 | 139 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-31 | 261 | 353 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MASISRGNSD SENGEKYGPH EFCRKVEQGF TPFVGKQFVD VIEGYKFYKI YAIACGFDVR 60 LWTQKRWGDG TIQSKLIVCN REGFWESKKK KKNEGCDSIT DGRRTKTHRI GCRARMRMWV 120 MNGVVTVDTF NENHNHELVS VENRQFQRLG KRLTKYHKRF IVSNSRLNVG ATKTYRICKE 180 LVDGFENVGA SLNDFKNFQR DVKCFINERD GQLFVDHLRS MKETRPGFYF DYDVDAKGCL 240 RRVIWADDFA RKNYAVFGDA VSFDPTYSTN KYSMVFTPFT GVDNHKKSVT FCAALISKED 300 SETFQWVFER FLSAMGGKEP SYIITDQDPG IIKSVNDVFK TARHRFCMWH IMNKVPSKFG 360 VSRPDYQEFL RKLNCIIWDE NITGVEFDDQ WNAIMDENGV GEGDWFSESF DIRRQWVMAH 420 CKDLYMGGVL RTTQRSESEN SYFKRFESKS GTLIEFWMRF ESAMDQQRYN QRKLENENLH 480 STPMLLGFSE LEKDGARVFT DVIFKEFQDE VKCSMTTCFC KGYKEDGGDE VTSVNDTEKE 540 RIYEVRYNTG HGVKKLPKCL IATRWRKDAL KFAGDSIDGN GVFVGADADG RKLELSKLWA 600 EIHEAVGLVC GLDESNVVQL TNLIREFRES HTSSIQPLSK EKEIEDLLGV KLSSEVSILP 660 PRHSKNKGSG KRLTSSKSKA VALAKKPKRL CNNCKQMANH DRRNCPNPFV ASRDEVEQMT 720 VDEEGNLDVD EF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-68 | FAR1-related sequence 5 |