PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5358.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 732aa    MW: 84398.5 Da    PI: 8.1132
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5358.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.41e-1746139190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                kfY+ YA  +GF+vr  ++k+   +g+i ++  vC++eg+ e++kkk      + +  r+++++r+gC+a++++  + +g+  v++++++HnHel+
  Dca5358.1  46 KFYKIYAIACGFDVRLWTQKRW-GDGTIQSKLIVCNREGFWESKKKKknegcdSITDGRRTKTHRIGCRARMRMWVM-NGVVTVDTFNENHNHELV 139
                6***************998887.8899*************999999977887755666788999************9.****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-1446139IPR004330FAR1 DNA binding domain
PfamPF105511.3E-31261353IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MASISRGNSD SENGEKYGPH EFCRKVEQGF TPFVGKQFVD VIEGYKFYKI YAIACGFDVR  60
LWTQKRWGDG TIQSKLIVCN REGFWESKKK KKNEGCDSIT DGRRTKTHRI GCRARMRMWV  120
MNGVVTVDTF NENHNHELVS VENRQFQRLG KRLTKYHKRF IVSNSRLNVG ATKTYRICKE  180
LVDGFENVGA SLNDFKNFQR DVKCFINERD GQLFVDHLRS MKETRPGFYF DYDVDAKGCL  240
RRVIWADDFA RKNYAVFGDA VSFDPTYSTN KYSMVFTPFT GVDNHKKSVT FCAALISKED  300
SETFQWVFER FLSAMGGKEP SYIITDQDPG IIKSVNDVFK TARHRFCMWH IMNKVPSKFG  360
VSRPDYQEFL RKLNCIIWDE NITGVEFDDQ WNAIMDENGV GEGDWFSESF DIRRQWVMAH  420
CKDLYMGGVL RTTQRSESEN SYFKRFESKS GTLIEFWMRF ESAMDQQRYN QRKLENENLH  480
STPMLLGFSE LEKDGARVFT DVIFKEFQDE VKCSMTTCFC KGYKEDGGDE VTSVNDTEKE  540
RIYEVRYNTG HGVKKLPKCL IATRWRKDAL KFAGDSIDGN GVFVGADADG RKLELSKLWA  600
EIHEAVGLVC GLDESNVVQL TNLIREFRES HTSSIQPLSK EKEIEDLLGV KLSSEVSILP  660
PRHSKNKGSG KRLTSSKSKA VALAKKPKRL CNNCKQMANH DRRNCPNPFV ASRDEVEQMT  720
VDEEGNLDVD EF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-68FAR1-related sequence 5