PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5222.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 321aa    MW: 36396 Da    PI: 4.7694
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5222.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1957110356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ +q+++Le++F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Dca5222.1  57 KKRRLSVDQVKALEKYFDVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                566899***********************************************9 PP
2HD-ZIP_I/II126.71e-4056148193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls +qvk+LE+ F+ e+kLeperKv+la+eLglqprqvavWFqnrRAR+kt+qlE+dy+aLk+++d+lk++ e+L++++++L ++++e
    Dca5222.1  56 EKKRRLSVDQVKALEKYFDVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTRQLERDYTALKANFDSLKQNYESLQHDKDSLLRKIEE 148
                  69*************************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-1937114IPR009057Homeodomain-like
PROSITE profilePS5007117.31352112IPR001356Homeobox domain
SMARTSM003894.3E-1955116IPR001356Homeobox domain
CDDcd000866.92E-1757113No hitNo description
PfamPF000466.8E-1757110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-1964112IPR009057Homeodomain-like
PRINTSPR000319.1E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000319.1E-692108IPR000047Helix-turn-helix motif
PfamPF021832.6E-14113153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKRLGSSDSL GALMSLCPVS DEHSPRGNHM YSLEYQSMLD GLEKEGCMEE LGHIPEKKRR  60
LSVDQVKALE KYFDVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TRQLERDYTA  120
LKANFDSLKQ NYESLQHDKD SLLRKIEELK SKLNGENSEA DICLNGETKM LDSNNNTKGI  180
ELFTTPPSLS EGSDDAKLLN NEKKVADFKD GPSESDSSAI LNEGNNNSPN ASNSSSLQNE  240
QQQLSSSSPS SINCFNFTYW KADGLASVDN HNNNNKDNNN VYHPEFVKLE EHDFFSGEDA  300
CNIFSDEAAP TLHWYSSEQW T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725422.11e-132homeobox-leucine zipper protein ATHB-16-like
TrEMBLQ6F6B71e-141Q6F6B7_SILLA; SlHDL1
STRINGXP_010681015.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.18e-61homeobox protein 16