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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca50986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 258aa MW: 29144.9 Da PI: 5.0857 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.2 | 2.2e-07 | 86 | 176 | 5 | 90 |
FAR1 5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YA + GF++ +++++ + + + r++ +ke + + k + ++r+++++ tgCk ++ e ++ +++ +++l+HnH+l Dca50986.1 86 DYAMKKGFEIYTRSNNLMeEYLEAGVGRQYGGNKEPRYHMMKMLrlackKGGRKRSENSNVTGCKVFFEAAVE-NELFVIRSCRLDHNHDLD 176 7********9988887762444555677777777766666555589987777888999999*********999.9***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.5E-6 | 85 | 177 | IPR004330 | FAR1 DNA binding domain |
CDD | cd09272 | 3.09E-22 | 194 | 240 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAGILEEIFD LNVDYDEEVE SDSNSLPILE DENKVQEIEY NAQPSNLMEQ AVITLEGQNA 60 NNVEVTEPSV GMTFENCDSF AAFCFDYAMK KGFEIYTRSN NLMEEYLEAG VGRQYGGNKE 120 PRYHMMKMLR LACKKGGRKR SENSNVTGCK VFFEAAVENE LFVIRSCRLD HNHDLDPENS 180 RFTVSARARR TPAVFHERTK HIEIDCHFVR DAIKKGLIAP SYVPTSTQLA DVLTKSLGAP 240 QFHSLIGKIG VRNLYAPS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32250.4 | 5e-06 | FAR1-related sequence 2 |