PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Dca48996.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HSF

Protein Properties

Length: 337aa MW: 36484.2 Da PI: 6.4455

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca48996.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.7	1.2e-35	36	128	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++ed++++++isw+++g++fvv +++ fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k+ll++i+ Dca48996.1 36 FLTKTYSLVEDSAIDDVISWNDDGSTFVVRNPTVFARDLLPRYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNEFFRRGEKHLLCDIQ 123 9***************************************************************99.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Dca48996.1 124 RRKTT 128 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.7E-37	28	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.3E-57	32	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.41E-35	33	125	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.8E-32	36	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	36	59	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	75	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	87	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MSPPPSPPAE EKPEKLTAVV VGGGGGETQR SVPTPFLTKT YSLVEDSAID DVISWNDDGS 60 TFVVRNPTVF ARDLLPRYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNEF FRRGEKHLLC 120 DIQRRKTTPT TPPPPQQQPS TAAPTNSSDE QVISNSNSPP LAIPSVIMHR HHHHHHLYHN 180 NNSSGSSNNN NNNNNKIDRN NNENCMNNVR GDLMDENERL RRENVELNKE LTNMKTLCNN 240 IFSLMSTFGG GSPAAISGGA DAVTTALDLL PRGSCGGGGG GSPMIFGVSI GGKRGREGGD 300 DGGGEVVGGG EGLGATEVHD DHMHTDLVIK SEPSSCG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdk_A	4e-23	32	125	7	110	Heat shock factor protein 2
5hdk_B	4e-23	32	125	7	110	Heat shock factor protein 2
5hdk_C	4e-23	32	125	7	110	Heat shock factor protein 2
5hdk_D	4e-23	32	125	7	110	Heat shock factor protein 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693477.1	1e-107	PREDICTED: heat stress transcription factor B-2a
TrEMBL	A0A249Y723	3e-99	A0A249Y723_9CARY; Heat stress transcription factor B-2a (Fragment)
STRING	XP_010693477.1	1e-106	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	8e-56	heat shock transcription factor B2A