PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Dca4893.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 356aa MW: 40661 Da PI: 8.7834

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca4893.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.9	2.7e-07	3	37	57	91
FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +tr +Cka ++ k + dg we+ + l+HnH+l+p Dca4893.1 3 TTRSKCKAWIRTKINGDGLWEIVDHILDHNHPLTP 37 799*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-5	2	37	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MNTTRSKCKA WIRTKINGDG LWEIVDHILD HNHPLTPPQW QHHHRSERRI TTEEGEVIQI 60 MTEAMVPPSV QYRIATATAG GEEFVGHTKR DHINFVNRIK MHAIEGGDAS TLVNLLAKRQ 120 TEDPGFFYRV EFGEGDEKTE SFEWLFNAFN ESMGGDVIPV SIFTDQDLAM SIAIDKVYTL 180 SLFRMFEKEF GLAMGTRVVE CVSDGSISSY IVYSSGGTEI PHHRWTKFAK KDVWDRLLPN 240 DTRKAGINDA INWRRDTLTN FHNLNTKCQN LPEARAILDK AFATTNQEVV SFFNRMEVEH 300 RSSALLDTST PIQDPQRSKT KGRNQRKRSS LTKRKRKGPK EPLAEASSYT PIPRLL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MNTTRSKCKA WIRTKINGDG LWEIVDHILD HNHPLTPPQW QHHHRSERRI TTEEGEVIQI  60
MTEAMVPPSV QYRIATATAG GEEFVGHTKR DHINFVNRIK MHAIEGGDAS TLVNLLAKRQ  120
TEDPGFFYRV EFGEGDEKTE SFEWLFNAFN ESMGGDVIPV SIFTDQDLAM SIAIDKVYTL  180
SLFRMFEKEF GLAMGTRVVE CVSDGSISSY IVYSSGGTEI PHHRWTKFAK KDVWDRLLPN  240
DTRKAGINDA INWRRDTLTN FHNLNTKCQN LPEARAILDK AFATTNQEVV SFFNRMEVEH  300
RSSALLDTST PIQDPQRSKT KGRNQRKRSS LTKRKRKGPK EPLAEASSYT PIPRLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1-related sequence 5