PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46517.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 307aa    MW: 34021 Da    PI: 7.1811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46517.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2088137255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Dca46517.1  88 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 137
                 7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-2288146No hitNo description
PROSITE profilePS5103225.75288145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3388146IPR001471AP2/ERF domain
PfamPF008472.3E-1488137IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2288145IPR016177DNA-binding domain
SMARTSM003805.1E-3888151IPR001471AP2/ERF domain
PRINTSPR003676.8E-1289100IPR001471AP2/ERF domain
PRINTSPR003676.8E-12111127IPR001471AP2/ERF domain
Gene3DG3DSA:2.60.120.106.4E-5191217IPR014710RmlC-like jelly roll fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMYYGSYVGG SNSPFDGESS SSVITGVKEE NIQSPIQVQS STIISSSATT SPPSSATYHT  60
PSTTTTTTTT SSTTSTSTFE ETGERKRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT  120
AEAAARAYDE AALRFRGSRA KLNFPEFVHS LGNAAATTTT SARPPPPLPT TTTTYFPTIS  180
PGIRVPQSIN FQQPQQQQQQ QQQQQQQQQQ QQQQQLQSQV HNNPDIMGDY LEYSRLLQNT  240
SGDFNFPALE QNLLSSSSSY QQPFSVEQMG VFRQPMDGED QPSNSTSSAN TNTWSQTSHH  300
YRPPPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2585150268ATERF1
3gcc_A4e-2585150268ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681129.19e-53PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A0K9QNR33e-40A0A0K9QNR3_SPIOL; Uncharacterized protein
STRINGXP_010681129.13e-52(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-22ethylene response factor 110