PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Dca45672.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 351aa MW: 40915.5 Da PI: 7.9459

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca45672.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.8	6.2e-17	52	145	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+ YA +GF++r+ +++k ++g+ +++ vC++egk +++kk+ ++ +r+ ++ +gCka++++ +g ++++++++eH+Hel+p Dca45672.1 52 FYKIYALFIGFDIRRYSEHKW-DDGTLKTKLIVCNREGKYKSKKKTecidnsGDNVQRRGKVLAVGCKARIRLFCL-NGLFKINQFVEEHSHELVP 145 9*************99998.8888*************999999987666677888999*****999.9**************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-13	52	145	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-14	266	323	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MVEMQIVCAE RGVIDTASLN GMNESYLCET VKEDFKPFVW QEFVSVNEAA GFYKIYALFI 60 GFDIRRYSEH KWDDGTLKTK LIVCNREGKY KSKKKTECID NSGDNVQRRG KVLAVGCKAR 120 IRLFCLNGLF KINQFVEEHS HELVPVEDRE FQKLSTSLTE YHKAFILSNI RLNIGATKTY 180 RMIKEHVNGF ENIGATLNQF RNFQRDMKCF IHDRDGQLLI DRFKSMEENV PDFFFDYDVD 240 EDGSLRRVIW ADGVRRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFCGAL 300 IAKEDFESFN WVFTKFLSCM GGKQWWSYVV SSGVSRPHFN AKYNFETYAN S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MVEMQIVCAE RGVIDTASLN GMNESYLCET VKEDFKPFVW QEFVSVNEAA GFYKIYALFI  60
GFDIRRYSEH KWDDGTLKTK LIVCNREGKY KSKKKTECID NSGDNVQRRG KVLAVGCKAR  120
IRLFCLNGLF KINQFVEEHS HELVPVEDRE FQKLSTSLTE YHKAFILSNI RLNIGATKTY  180
RMIKEHVNGF ENIGATLNQF RNFQRDMKCF IHDRDGQLLI DRFKSMEENV PDFFFDYDVD  240
EDGSLRRVIW ADGVRRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFCGAL  300
IAKEDFESFN WVFTKFLSCM GGKQWWSYVV SSGVSRPHFN AKYNFETYAN S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-36	FAR1-related sequence 5