 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Dca44175.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
| Family |
HSF |
| Protein Properties |
Length: 244aa MW: 28376.1 Da PI: 9.1267 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Dca44175.1 | genome | DCA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 108 | 7.4e-34 | 33 | 125 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl k+y +++d ++++++sw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++ + weF+++ F+k+k+ell i+
Dca44175.1 33 FLFKTYMLVDDTSTDDMVSWTEDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVTTMR---------WEFQNDMFRKNKQELLVGIR 120
99***************************************************************999.........******************** PP
XXXXX CS
HSF_DNA-bind 99 rkkse 103
r+k++
Dca44175.1 121 RRKTS 125
**986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MRELSIKGLF DDHDDDDECG IIMRRKMTKP APFLFKTYML VDDTSTDDMV SWTEDGTAFV 60
VWQPAEFARD LLPTLFKHSN FSSFVRQLNT YGFRKVTTMR WEFQNDMFRK NKQELLVGIR 120
RRKTSRNSRR SLAATANLHT VSDIRSSSTT SSSSELNYLI DENKKLKKEN GVLCSELNAM 180
KRKCQELFRL VALFGNEVDE DGDSDGDDGN NKNRPKLFGV RLDLQDESER KRRKKLALDY 240
TRTL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1hks_A | 4e-21 | 30 | 122 | 5 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
| 1hkt_A | 4e-21 | 30 | 122 | 5 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
| 2ldu_A | 5e-21 | 30 | 125 | 18 | 123 | Heat shock factor protein 1 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 228 | 235 | ERKRRKKL |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
