PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca43700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family DBB
Protein Properties Length: 190aa    MW: 21271.7 Da    PI: 5.8606
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca43700.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-08443538
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 C+ +e++e++ fC  ++  lC+dC +  H+       H+
  Dca43700.1  4 QCDVCEKQEASVFCAADEAALCKDCDQRVHHAnklaskHQ 43
                7****************************74446777776 PP

2zf-B_box34.63.9e-115592338
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                ++ C+ ++ek+++lfC++++  lC++C  ++Hk   Ht
  Dca43700.1 55 APLCDICQEKRAILFCREDRAILCRECDISIHKAneHT 92
                789*****************************878865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.448147IPR000315B-box-type zinc finger
CDDcd000212.01E-7347No hitNo description
PfamPF006433.4E-6444IPR000315B-box-type zinc finger
SMARTSM003363.3E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578454.81E-55293No hitNo description
SMARTSM003361.2E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.60853100IPR000315B-box-type zinc finger
PfamPF006431.5E-95592IPR000315B-box-type zinc finger
CDDcd000212.79E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKIQCDVCEK QEASVFCAAD EAALCKDCDQ RVHHANKLAS KHQRFSLLHP SFKDAPLCDI  60
CQEKRAILFC REDRAILCRE CDISIHKANE HTQTHNRFLL TGVKISASST SYPNSSPLST  120
SSSETVSVSV SSCANNSYYS NMSKTTSSMT DYTPIYEDGS SNTTPDYFME TVSGWRLEDL  180
LDSSYAPQYF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021753521.15e-81B-box zinc finger protein 20-like
RefseqXP_021849954.15e-81B-box zinc finger protein 20-like
SwissprotQ0IGM71e-66BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A0K9QAT54e-79A0A0K9QAT5_SPIOL; Uncharacterized protein
STRINGXP_010690797.11e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.18e-57DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]