PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Dca42706.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 159aa MW: 18610.8 Da PI: 8.5885

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca42706.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.6	9.3e-09	44	136	7	90
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle.....leHnHela 90 A e GF ++k+++ ++ +++ e + f+Cs++g++++ + +k +++ +++++C+ +++ +++ +++ w++ + +HnHel+ Dca42706.1 44 AFENGFALVKATNGQKnRKQPELLASYFRCSRYGRSKSVYDP-DKPKKKPRTQKCDCDFRVRAVQNYhsidNKRvvlWNI---ViskgfGNHNHELT 136 77899999887655488999**********999888.6677777778899988887655544543332222443...24446699**97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-5	43	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSDVDSVDSF EDFRGDDVDY NPLFVTKVCF KDRDEAFDWA NNVAFENGFA LVKATNGQKN 60 RKQPELLASY FRCSRYGRSK SVYDPDKPKK KPRTQKCDCD FRVRAVQNYH SIDNKRVVLW 120 NIVISKGFGN HNHELTKYKD GHRHYAGLDE EEKAYIKQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	KPKKKPR
2	87	93	PKKKPRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-