PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca42700.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 309aa MW: 34059.5 Da PI: 6.1339

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca42700.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.5e-33	98	152	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fv+av++LGGse+AtPk ++ +m+v+gLt++hvkSHLQkYR+ Dca42700.1 98 KSRMRWTPELHEAFVDAVNHLGGSERATPKGVVSHMNVEGLTIYHVKSHLQKYRS 152 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.209	95	155	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-17	96	152	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-30	96	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-24	98	152	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	100	151	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-20	184	226	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGQLQDLLDF PDGLSLSNDN HVKGIWSELA DEDLYADTVE PNWNEFLGNS NVGDQQQKVP 60 QSSSDAAAPK TSVQQQVSLP TREVSASANS TSSAQPNKSR MRWTPELHEA FVDAVNHLGG 120 SERATPKGVV SHMNVEGLTI YHVKSHLQKY RSARIKQESS EGNAENRTSA AEQASPVDLK 180 TSITITEALR MQMQVQKQLH EQLEIQRKLQ LQIEEQGKYL LQMLGSHNKL ETEKSVSGPS 240 KVDHSSSDVK SEPDLRTTYQ AAGENSDSHG LKGKQKFTDS SVVSNQHSQD DGAAPRVTKV 300 AKIDNSLRY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-28	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-28	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-28	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-28	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-28	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-28	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-28	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-28	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675144.1	1e-115	PREDICTED: myb family transcription factor PHL13
Swissprot	F4J3P7	2e-66	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	Q9M620	1e-119	Q9M620_MESCR; CDPK substrate protein 1
STRING	XP_010675144.1	1e-114	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	8e-69	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]