PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Dca42659.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 260aa MW: 30703.4 Da PI: 10.1056

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca42659.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.9	6e-17	16	109	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY+ YA +GF+ r+ ++k+ ++g+ ++ vC++eg+ ++kk+ +e +r+++ +r+gC+a++++ + +g+ +++ +++ HnHel+ Dca42659.1 16 KFYKIYAFACGFTARRWSTKRW-DDGSLQSKLVVCNREGFYGSKKKRkikeesSEVVERRSKMHRIGCRARMRLYVK-NGVVRIDVFDEYHNHELV 109 6***********99988777.9999*********999998878777656666788999******999.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-13	16	109	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-12	199	254	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MPFIGKEFHD VEVGIKFYKI YAFACGFTAR RWSTKRWDDG SLQSKLVVCN REGFYGSKKK 60 RKIKEESSEV VERRSKMHRI GCRARMRLYV KNGVVRIDVF DEYHNHELVS PENRQFQKMA 120 RHLTKYHKKL ILSNSRRDVK CFIHDRDGQL FVDHLVSLKE TRPGFYFDYD VDAKGCLRRV 180 IWADNYARKS YALFGDALAY DPTYSTNKYS MVFTPFTGVD NHKKSITFCG ALIAKEDYES 240 FVWVFTRFLI AMVIRLSRVT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-28	FAR1-related sequence 5