PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42030.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 659aa    MW: 73989.8 Da    PI: 7.0429
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42030.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.78.5e-30155240187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l+L+e+r++++++++++++k+plW+ev++ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Dca42030.1 155 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVARIMgEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 240
                 8*************************************99******************************98..55667*******85 PP
2trihelix605.7e-19447525178
    trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                 +W+++ev  Li++r++me+r+++ g +++ lWe+++ km+  g+ rs+  Ck+kw+++n +++  k+  +k +s+++++
  Dca42030.1 447 QWPEHEVTRLIQVRTSMESRFQQcGFSEEVLWEDIATKMAYLGYDRSAMVCKQKWDSINDYFRGSKRPLIKDESKKKRK 525
                 7*********************967899**************************************9999986666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.899148213IPR017877Myb-like domain
SMARTSM007170.017152215IPR001005SANT/Myb domain
PfamPF138373.9E-20154241No hitNo description
CDDcd122036.65E-21155220No hitNo description
SMARTSM007176.7444507IPR001005SANT/Myb domain
PROSITE profilePS500906.365444505IPR017877Myb-like domain
CDDcd122033.50E-23446512No hitNo description
PfamPF138374.1E-13446518No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MEMENHTPPP PPQYNISDLR HFITTTGHAG PHHFPSFIGG QPSSLSDLMT AHNHHRTTTA  60
SAAAAVPPHP THHHYTNNNS SGGNNEMVVM GRHLGGTAAA ADAAISGSGV GVGVVDMLHH  120
HPHHHYQDHF SCDATGAAAA AAAANFDGGD GNAARWPRQE TLTLLEIRSR LDHKFKEANQ  180
KGPLWDEVAR IMGEEHGYQR SGKKCREKFE NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA  240
LYGGSGSDHH PTSLTSETQI TENTPQFHAL PTQPSHASLV VPPHAAPRGC DTSVSLSNSF  300
DFETSSTDND ELNGSMESND GSMETNNNKK KKKRGYGGSG NWKAKIKEFI DEQMRKIMEK  360
QETWLDKMMN TLESRERERM VREEEWRKQE ADRVEREQKF WASERAWIEA RDSALMSALD  420
KLTASSNINN NINNNDDITT NGGRNNQWPE HEVTRLIQVR TSMESRFQQC GFSEEVLWED  480
IATKMAYLGY DRSAMVCKQK WDSINDYFRG SKRPLIKDES KKKRKENYNG IHPQNHHHHN  540
NNRSNEGGGG IYMNQLSGFN DTTTNNNNNN NNNNNNNCEI NEPRLQLNEK SSSPSSHNSN  600
VNNNNNNNGS NNNSNNVNGV GNVMNDSCLR FFLGDHGESN LGWESNYGLK LNNGDNHCA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106304.10.0PREDICTED: trihelix transcription factor PTL isoform X1
TrEMBLA0A0K9QYQ71e-164A0A0K9QYQ7_SPIOL; Uncharacterized protein
STRINGXP_010683862.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-95Trihelix family protein