PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41810.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 457aa    MW: 51753.3 Da    PI: 4.7205
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41810.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.25.8e-29411502102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTT........XTTSEEEEESXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekksks........kekiweFkhksFkkg 89 
                   Fl+k+y+++++++++ +isws +g+sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+Y g + +        s        +++ weF+++ F +g
    Dca41810.1  41 FLSKTYDLVDEPSIDPIISWSGRGDSFVVWDPVEFSRLILPRNFKHNNFSSFVRQLNTYvGTSYILYCYFVYYSlcsgfrkiDPDKWEFANEGFLRG 137
                   9**********************************************************5444444444443336666554459************* PP

                   XXXXXXXXXXXXX CS
  HSF_DNA-bind  90 kkellekikrkks 102
                   kk+ll++i+r+ks
    Dca41810.1 138 KKHLLKNIHRRKS 150
                   ***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.61E-3236148IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-4937148IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.2E-3437148IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-2741148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-134164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-137991IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-1392104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSSSLDPFLP DPYPFHSTCL EEAVRPQPME CLLLGNSIPP FLSKTYDLVD EPSIDPIISW  60
SGRGDSFVVW DPVEFSRLIL PRNFKHNNFS SFVRQLNTYV GTSYILYCYF VYYSLCSGFR  120
KIDPDKWEFA NEGFLRGKKH LLKNIHRRKS PQAQQQQSAS SYGGSSSEVA KPGIGCEIER  180
LREERSVMMQ EVIELQQQQR GTSERMEMVK DRLQASEQRQ KQMVSFLAKV LQNPGFMDRL  240
KKMKESRALG SPKTKRKFLR QKHHQETGCS SKSMVKFRPE FPDFGDFSTD FPDYLLQDVV  300
ENACTSTETM PFGIEDVPLD ELMDIPGAVL KKEKSPQPED VPGYLVSFPE ELGTTERTFP  360
EFSSPGIEDV LKKEEVWSMG FDLSTDVSGS SPALWGNIAS YDVGTSQSGE FSDIMDLGSL  420
VTPVSSGIEK WPDVGYPQPG QSGNLYPEYK DDDDLNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-203614815120Heat shock factor protein 1
5d5u_B3e-203614824129Heat shock factor protein 1
5d5v_B3e-203614824129Heat shock factor protein 1
5d5v_D3e-203614824129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764808.11e-149heat stress transcription factor A-3-like
TrEMBLA0A438JS881e-126A0A438JS88_VITVI; Heat stress transcription factor A-3
STRINGXP_010683874.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-90heat shock transcription factor A3