PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca40839.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 705aa    MW: 81755.5 Da    PI: 7.7744
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca40839.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.11.5e-1852145190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY+ YA  +GF++++ ++kk  ++g+++++  vC++egk+++++k+      +e ++r+r    tgCka +++    +g+ +v+k+e  HnHel 
  Dca40839.1  52 SFYRIYAVACGFDMKRYTEKKW-KDGSTKMKLIVCNREGKHRPKNKSsklddsEEPKSRRRRIRATGCKAGMELFAL-NGVLKVAKFERRHNHELI 145
                 59***************99887.8888****************99999***99999999***************999.9***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1452145IPR004330FAR1 DNA binding domain
PfamPF105511.7E-30267359IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MMENMQILNF SEGSVEIPNI SDINEAQLCD KVVEGFTPYV GQEFASIDEA ASFYRIYAVA  60
CGFDMKRYTE KKWKDGSTKM KLIVCNREGK HRPKNKSSKL DDSEEPKSRR RRIRATGCKA  120
GMELFALNGV LKVAKFERRH NHELISVENR EFQKLSNNLS EYHKSFIVSN FRLNIGATRT  180
YRMIKEYFNG FENVGASLNS FKNFQRDIKC FIHERDGQMF IDRFKKMEEN RDGFYFDYDV  240
DDDGSLRLAI WVDGIAKRNY ELFGDAVSFD PTYSTNKYSM VFTPFTGVDN HKKSVTFCAA  300
LIAKEDFDSF NWVFSRFLSA MGGKEPEYII TDQDPGIIKS VSHVFKRSRH RFCMWHIMNK  360
VPTKFGTTRT DYKDFLAKLN SLIWNDDIDA SEFDQLWSGI MEEHGVGHDD WFQELFAIRK  420
QWVLAHCKDL RMGALLRTTQ RSESSNSFFK RFEHKTGTLV EFWMRFESAM DQQRHTKKKL  480
DNEDKHLEPQ LITKLKIEED GSKVYSFEIF LEFQEEVNCS ISKCSCRGYK EESGEEISRV  540
KDSGNGRFYD VHYNPDSTSN CNVRQLEMSK LSTEINETVR FLQSADLKYV GELCDKLRQF  600
REEHTSNNET PTLTKDQEFE KLLGCKVSNE ISIMPPKQSK NKGSGKRMLS NKNIAIAVSG  660
KQKRLCNNCK QMAHHDKRNC PNSYVEKAPL PNESTDGLDV IGDGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-64FAR1-related sequence 5