![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca40839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 705aa MW: 81755.5 Da PI: 7.7744 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.1 | 1.5e-18 | 52 | 145 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA +GF++++ ++kk ++g+++++ vC++egk+++++k+ +e ++r+r tgCka +++ +g+ +v+k+e HnHel Dca40839.1 52 SFYRIYAVACGFDMKRYTEKKW-KDGSTKMKLIVCNREGKHRPKNKSsklddsEEPKSRRRRIRATGCKAGMELFAL-NGVLKVAKFERRHNHELI 145 59***************99887.8888****************99999***99999999***************999.9***************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-14 | 52 | 145 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.7E-30 | 267 | 359 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 705 aa Download sequence Send to blast |
MMENMQILNF SEGSVEIPNI SDINEAQLCD KVVEGFTPYV GQEFASIDEA ASFYRIYAVA 60 CGFDMKRYTE KKWKDGSTKM KLIVCNREGK HRPKNKSSKL DDSEEPKSRR RRIRATGCKA 120 GMELFALNGV LKVAKFERRH NHELISVENR EFQKLSNNLS EYHKSFIVSN FRLNIGATRT 180 YRMIKEYFNG FENVGASLNS FKNFQRDIKC FIHERDGQMF IDRFKKMEEN RDGFYFDYDV 240 DDDGSLRLAI WVDGIAKRNY ELFGDAVSFD PTYSTNKYSM VFTPFTGVDN HKKSVTFCAA 300 LIAKEDFDSF NWVFSRFLSA MGGKEPEYII TDQDPGIIKS VSHVFKRSRH RFCMWHIMNK 360 VPTKFGTTRT DYKDFLAKLN SLIWNDDIDA SEFDQLWSGI MEEHGVGHDD WFQELFAIRK 420 QWVLAHCKDL RMGALLRTTQ RSESSNSFFK RFEHKTGTLV EFWMRFESAM DQQRHTKKKL 480 DNEDKHLEPQ LITKLKIEED GSKVYSFEIF LEFQEEVNCS ISKCSCRGYK EESGEEISRV 540 KDSGNGRFYD VHYNPDSTSN CNVRQLEMSK LSTEINETVR FLQSADLKYV GELCDKLRQF 600 REEHTSNNET PTLTKDQEFE KLLGCKVSNE ISIMPPKQSK NKGSGKRMLS NKNIAIAVSG 660 KQKRLCNNCK QMAHHDKRNC PNSYVEKAPL PNESTDGLDV IGDGV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-64 | FAR1-related sequence 5 |