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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca4047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 447aa MW: 51118.9 Da PI: 8.0427 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.9 | 4e-19 | 130 | 237 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....................tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 f + YA +GF+ r +++ k+n+ i ++++ C+k+g++e++k+ ++k++r+++ tr+gCka++++k d+ ++++++ Dca4047.1 130 FCKIYALACGFEYRLGTQRMFKDNT-IRRKDLLCNKQGFKESKKNClsvssetqesseiaapknrkKQKKERNTKITRVGCKAMIRIKFL-DKMYVIERF 227 7788**************9996666.***************99888******************9888889999**************99.9******** PP FAR1 82 eleHnHelap 91 ++ HnH+l++ Dca4047.1 228 KEAHNHKLCS 237 ********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-16 | 130 | 236 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.3E-21 | 358 | 435 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MENHHQNVVN RCSTSNFFEI DQNSSKSSLT ADLLPMEEEQ QQEQQYQEEL IEGSDSMTDL 60 DISANVNEVT NQNGVPVTPT VPTEAYESMT TPVLPQYTPN GSEEWIRTIE KEITPTVGKK 120 FYTVEEAVDF CKIYALACGF EYRLGTQRMF KDNTIRRKDL LCNKQGFKES KKNCLSVSSE 180 TQESSEIAAP KNRKKQKKER NTKITRVGCK AMIRIKFLDK MYVIERFKEA HNHKLCSAKH 240 RLFSKQSANL SLYHKQMIVN NSKVNIGPTK TFRICKEFAN GYENVGASLL HFKNFQRDVK 300 CFIGEKDAEM FVNNLHKLSE TRKGFYFAYD VDAGQNLCRV FWADAVARRN YSVFGDAVTF 360 DPTYGTNKYM MVFTPFTGID NHKKSVTFAG ALLSNEDEAS FTWAFTKFLD AMGNKEPKIL 420 LTDQDPAIKN AVQLFLKQRD TDFACGT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-40 | FAR1-related sequence 5 |