PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4047.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 447aa    MW: 51118.9 Da    PI: 8.0427
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4047.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.94e-19130237291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....................tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                f + YA  +GF+ r  +++  k+n+ i ++++ C+k+g++e++k+                     ++k++r+++ tr+gCka++++k   d+ ++++++
  Dca4047.1 130 FCKIYALACGFEYRLGTQRMFKDNT-IRRKDLLCNKQGFKESKKNClsvssetqesseiaapknrkKQKKERNTKITRVGCKAMIRIKFL-DKMYVIERF 227
                7788**************9996666.***************99888******************9888889999**************99.9******** PP

       FAR1  82 eleHnHelap 91 
                ++ HnH+l++
  Dca4047.1 228 KEAHNHKLCS 237
                ********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-16130236IPR004330FAR1 DNA binding domain
PfamPF105514.3E-21358435IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MENHHQNVVN RCSTSNFFEI DQNSSKSSLT ADLLPMEEEQ QQEQQYQEEL IEGSDSMTDL  60
DISANVNEVT NQNGVPVTPT VPTEAYESMT TPVLPQYTPN GSEEWIRTIE KEITPTVGKK  120
FYTVEEAVDF CKIYALACGF EYRLGTQRMF KDNTIRRKDL LCNKQGFKES KKNCLSVSSE  180
TQESSEIAAP KNRKKQKKER NTKITRVGCK AMIRIKFLDK MYVIERFKEA HNHKLCSAKH  240
RLFSKQSANL SLYHKQMIVN NSKVNIGPTK TFRICKEFAN GYENVGASLL HFKNFQRDVK  300
CFIGEKDAEM FVNNLHKLSE TRKGFYFAYD VDAGQNLCRV FWADAVARRN YSVFGDAVTF  360
DPTYGTNKYM MVFTPFTGID NHKKSVTFAG ALLSNEDEAS FTWAFTKFLD AMGNKEPKIL  420
LTDQDPAIKN AVQLFLKQRD TDFACGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-40FAR1-related sequence 5