PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Dca38163.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 723aa MW: 82979.4 Da PI: 8.6468

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca38163.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25	6.4e-08	42	136	5	90
FAR1 5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.......dgkwevtkle..leHnHela 90 e A+e GF ++k+++ ++ +r+ e + f+Cs++g+++ + ek +++ +++++C+ +++ +++ +w++++ + HnH+l+ Dca38163.1 42 EIAQENGFVLVKANNGSKnRRQPELLASYFRCSRYGRSKAVYDP-EKPKKKPRTQKCDCRFRIRAVQNYrfvhnkrVVVWNIDTSDtfGCHNHALT 136 56999**99988765549999************9999888.777777778888888888755444445411133466665555568999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-5	42	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.9E-25	251	346	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MSVAESVDSF ENLGGDNVDY NHLFVTEVCF EDRDKAFDWA NEIAQENGFV LVKANNGSKN 60 RRQPELLASY FRCSRYGRSK AVYDPEKPKK KPRTQKCDCR FRIRAVQNYR FVHNKRVVVW 120 NIDTSDTFGC HNHALTKYKD GQRGYAGLDE DEKAFVRQQY SNAVLPRDIK TGLHLKSPDK 180 PQPSSKQIYN VTSKIRREVK GDRNPAQQML ALAVEANYVH WHETNPLTLE LTHVFMSHPE 240 AVKLFRAYPH VVLMDSTYKT NIYKMTLVEV VGVTPGGSSF LIACVLIPME SEEGYMWLLR 300 KLMEILECTG VSPSAFVTDR ELGLVGALRN LFPDTPHLFC RWHVNRAVEN RALLIFKKEW 360 YKNHVLHNPE TGWYNVINST TEEEFKVAWN AFSTKWIQLA SYVSKTWGEH ASKFVLCYTN 420 EFFHLGNTAT SRVESAHSLL KAWLKSAHLT LDTMWSRIHS MLEGQHSKIR KELEQSISKP 480 RITHRMFSLL HGSVSIKAIE IMEEEIKRGD ALGVGLEQRC GCALRSTCGL PCSCELIRLR 540 DNGRRVHLGD IHVFWKTLVY DSNDAMPKND NDMLDELVEK ARKNVKPPAV RDNPKGRPRG 600 STTRSKSSFE HSRNKYGTPS TDASTNVEHR ICDFHAGEVG APLEKNYTIG VFSTWKKRFG 660 VPECLWSFFD GWVDVGDDGH CGFRVISHAQ RGQEKDYVVM REWCVNEITT HDIYKSLFNA 720 TYK

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MSVAESVDSF ENLGGDNVDY NHLFVTEVCF EDRDKAFDWA NEIAQENGFV LVKANNGSKN  60
RRQPELLASY FRCSRYGRSK AVYDPEKPKK KPRTQKCDCR FRIRAVQNYR FVHNKRVVVW  120
NIDTSDTFGC HNHALTKYKD GQRGYAGLDE DEKAFVRQQY SNAVLPRDIK TGLHLKSPDK  180
PQPSSKQIYN VTSKIRREVK GDRNPAQQML ALAVEANYVH WHETNPLTLE LTHVFMSHPE  240
AVKLFRAYPH VVLMDSTYKT NIYKMTLVEV VGVTPGGSSF LIACVLIPME SEEGYMWLLR  300
KLMEILECTG VSPSAFVTDR ELGLVGALRN LFPDTPHLFC RWHVNRAVEN RALLIFKKEW  360
YKNHVLHNPE TGWYNVINST TEEEFKVAWN AFSTKWIQLA SYVSKTWGEH ASKFVLCYTN  420
EFFHLGNTAT SRVESAHSLL KAWLKSAHLT LDTMWSRIHS MLEGQHSKIR KELEQSISKP  480
RITHRMFSLL HGSVSIKAIE IMEEEIKRGD ALGVGLEQRC GCALRSTCGL PCSCELIRLR  540
DNGRRVHLGD IHVFWKTLVY DSNDAMPKND NDMLDELVEK ARKNVKPPAV RDNPKGRPRG  600
STTRSKSSFE HSRNKYGTPS TDASTNVEHR ICDFHAGEVG APLEKNYTIG VFSTWKKRFG  660
VPECLWSFFD GWVDVGDDGH CGFRVISHAQ RGQEKDYVVM REWCVNEITT HDIYKSLFNA  720
TYK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	KPKKKPR
2	87	93	PKKKPRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-16	FAR1-related sequence 5