PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Regulation |

Basic Information? help Back to Top

TF ID

Dca36999.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CPP

Protein Properties

Length: 1086aa MW: 118789 Da PI: 5.5366

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca36999.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.1	2.6e-16	430	467	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Dca36999.1 430 CKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQDCFNKP 467 89**********************************96 PP
2	TCR	50.3	4.7e-16	514	552	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Dca36999.1 514 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 552 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	7.7E-18	428	469	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.65	429	554	IPR005172	CRC domain
Pfam	PF03638	1.3E-11	431	466	IPR005172	CRC domain
SMART	SM01114	3.7E-17	514	555	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.8E-11	516	552	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048444	Biological Process	floral organ morphogenesis
GO:0051302	Biological Process	regulation of cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 1086 aa Download sequence Send to blast
MRFHFPFNSF SHPQPPLTTT NLHDYDHHHN NHHIATPSPL GGGSGRVNGL ILEFWHQVAD 60 PVKPQCASND GNKNSEADPG IEAELQPNGS TNADVDVEKD SVEPLCDVSE LTRALTYDSG 120 SPDYWTAATS SVACEPNSSN AIVPFVHDPS VRGSFGTEVN SQQMNHDNEE TSCDRESLIS 180 CNNNLFVFDS PNDGETLKGS FRKSLEEETN VYASLLSRFN SNEASEVKSS CHPTSGGCNE 240 AHEFACQSTQ PTEASEFKDI DQQPEHLRIS SVHEYFSVEA GDKPGNENFN GLYRGVRRRC 300 LTFDIARPKK GMDGVPFVNS LSSLQSEEKS VTPEGDSSRC VFPGIGLHLN ALAAASKDRG 360 ISYQEMISPT SHEPPPNNAL VLFEQDGVPT ENGTELVEDC AQLSANADEQ NSNSPKKKRR 420 KFESDEGGAC KRCNCKKSKC LKLYCECFAA GVYCVEPCSC QDCFNKPIHE ETVLATRKQI 480 ESRNPLAFAP KVIRTSDSAP EVGEDSTKTP ASARHKRGCN CKKSNCLKKY CECYQGGVGC 540 SINCRCEGCK NAFGRKDGST FLAIEAETED DQIPEKRTTE KSLDHPACRN DDNKSSEFSL 600 PKTPLTHYRQ SVLLQTSSKG KPPRSSLVTI SSTSSSHLND EQGRSKFLPA QSKNEKHLQN 660 VPEDEIPAVL QNSSPPSSSL QTLSPNSKRV SLPQHGKGQS PKLRTSPDYE RGYNQTFGSS 720 NGGPVVSLNV DGYDIVNQAP SGGNLAHANT GLNNGTEGWL AGSSPMNNST DSSPEDSGRA 780 WPYGSSSDYE YDASHDDEAR TEIVQGEDDS DHKVNDKSNK KSGTTVVERW IRFGDNSEDV 840 GKDKGKRKAT SDPKAALLPL GVLETKSTAT SFLQDLDKRL KRDIEAVEMR KINAKRAMIR 900 EGKKEANLGQ EFFTPLLIFD LEDSLGNKRE TMKMEEIPEG KGKEVMNPYA KEDSRESGAG 960 KRGVTEKRWI KNPIDEANSF LKKFSNWQNS VKKRKAVSDP QLALVPDYFL KSVDLSKIYL 1020 KGVNKRPRVG GANNEASSTS NSNSGGGSFQ IRIDTVIVDS DSTSDGSTAR DNGDSEVGLE 1080 QPPAEE

Sequence ? help Back to Top

Protein Sequence Length: 1086 aa Download sequence Send to blast

MRFHFPFNSF SHPQPPLTTT NLHDYDHHHN NHHIATPSPL GGGSGRVNGL ILEFWHQVAD  60
PVKPQCASND GNKNSEADPG IEAELQPNGS TNADVDVEKD SVEPLCDVSE LTRALTYDSG  120
SPDYWTAATS SVACEPNSSN AIVPFVHDPS VRGSFGTEVN SQQMNHDNEE TSCDRESLIS  180
CNNNLFVFDS PNDGETLKGS FRKSLEEETN VYASLLSRFN SNEASEVKSS CHPTSGGCNE  240
AHEFACQSTQ PTEASEFKDI DQQPEHLRIS SVHEYFSVEA GDKPGNENFN GLYRGVRRRC  300
LTFDIARPKK GMDGVPFVNS LSSLQSEEKS VTPEGDSSRC VFPGIGLHLN ALAAASKDRG  360
ISYQEMISPT SHEPPPNNAL VLFEQDGVPT ENGTELVEDC AQLSANADEQ NSNSPKKKRR  420
KFESDEGGAC KRCNCKKSKC LKLYCECFAA GVYCVEPCSC QDCFNKPIHE ETVLATRKQI  480
ESRNPLAFAP KVIRTSDSAP EVGEDSTKTP ASARHKRGCN CKKSNCLKKY CECYQGGVGC  540
SINCRCEGCK NAFGRKDGST FLAIEAETED DQIPEKRTTE KSLDHPACRN DDNKSSEFSL  600
PKTPLTHYRQ SVLLQTSSKG KPPRSSLVTI SSTSSSHLND EQGRSKFLPA QSKNEKHLQN  660
VPEDEIPAVL QNSSPPSSSL QTLSPNSKRV SLPQHGKGQS PKLRTSPDYE RGYNQTFGSS  720
NGGPVVSLNV DGYDIVNQAP SGGNLAHANT GLNNGTEGWL AGSSPMNNST DSSPEDSGRA  780
WPYGSSSDYE YDASHDDEAR TEIVQGEDDS DHKVNDKSNK KSGTTVVERW IRFGDNSEDV  840
GKDKGKRKAT SDPKAALLPL GVLETKSTAT SFLQDLDKRL KRDIEAVEMR KINAKRAMIR  900
EGKKEANLGQ EFFTPLLIFD LEDSLGNKRE TMKMEEIPEG KGKEVMNPYA KEDSRESGAG  960
KRGVTEKRWI KNPIDEANSF LKKFSNWQNS VKKRKAVSDP QLALVPDYFL KSVDLSKIYL  1020
KGVNKRPRVG GANNEASSTS NSNSGGGSFQ IRIDTVIVDS DSTSDGSTAR DNGDSEVGLE  1080
QPPAEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-16	431	551	12	120	Protein lin-54 homolog
5fd3_B	5e-16	431	551	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	415	419	KKKRR
2	415	420	KKKRRK
3	416	420	KKRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021859215.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0K9R5V1	0.0	A0A0K9R5V1_SPIOL; Uncharacterized protein
STRING	XP_010694035.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-101	TESMIN/TSO1-like CXC 2