PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HD-ZIP

Protein Properties

Length: 259aa MW: 28799.5 Da PI: 9.2475

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca36793.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.6e-18	106	160	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Dca36793.1 106 RKKLRLTKDQSAMLEESFKLQSTLNPKQKQALAERLDLLPRQVEVWFQNRRARTK 160 788899***********************************************98 PP
2	HD-ZIP_I/II	118.4	3.8e-38	106	195	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q+++LEesF+ +++L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e++k+++++l++en+rL+kev+eL+ +l Dca36793.1 106 RKKLRLTKDQSAMLEESFKLQSTLNPKQKQALAERLDLLPRQVEVWFQNRRARTKLKQTEEDCEYMKKWCETLTDENKRLQKEVQELK-AL 195 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00094	0	27	39	IPR018117	DNA methylase, C-5 cytosine-specific, active site
SuperFamily	SSF46689	8.98E-17	92	160	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.471	102	162	IPR001356	Homeobox domain
SMART	SM00389	4.1E-15	104	166	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-15	106	160	IPR001356	Homeobox domain
CDD	cd00086	5.93E-15	106	163	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-16	106	160	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	137	160	IPR017970	Homeobox, conserved site
SMART	SM00340	2.3E-22	162	205	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.9E-9	162	196	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSSYDNTLDL GLGLSSSHNR ANPKPQNNVH GGEPCLTLSL SGEKLAASAA SSMSNVVAVS 60 VKREREMTTS SDDEEDGSCA NINNNNNNNN SSNNNNNSNN NNIMTRKKLR LTKDQSAMLE 120 ESFKLQSTLN PKQKQALAER LDLLPRQVEV WFQNRRARTK LKQTEEDCEY MKKWCETLTD 180 ENKRLQKEVQ ELKALKLVQP FYMHLPTTTL SMCPSCEKIG PGGPITGKPV PVSKKGALAM 240 GSKSNFYPAR PNRPLLVDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	TRKKLRL
2	154	162	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680788.1	2e-93	PREDICTED: homeobox-leucine zipper protein HAT22
Swissprot	P46604	7e-70	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A199UAN1	6e-71	A0A199UAN1_MANES; Uncharacterized protein
STRING	XP_010680788.1	9e-93	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-65	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]