PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Basic Information? help Back to Top

TF ID

Dca36672.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Trihelix

Protein Properties

Length: 867aa MW: 98535.2 Da PI: 6.7661

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca36672.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43	1.1e-13	89	172	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 W+++evlaL+++r+ +e++ + + W+ vs+k++e gf+rs++ Ck+k+e+ + + + ++ ++ s+++++f +le Dca36672.1 89 WSNEEVLALLKIRSCLETNPSFP--PEFIWDNVSRKLEEVGFKRSAQNCKDKFEEETRSFNTNNIVINSDkSNVISQNYRLFGELE 172 ***************999987..899******************************99998766662566788999999887 PP
2	trihelix	89.9	2.7e-28	486	581	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ ++++ +k plWe+vs km e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Dca36672.1 486 RWPRDEVLALINIRCSLFNNNNNNNnggdnhekesfSKFPLWERVSHKMLELGYKRSSKRCKEKWENINKYFRKTKDLNKKR-SIDSRTCPYFQQLS 581 8************998888877667778888899*****************************************8.78889*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	5.2	85	145	IPR001005	SANT/Myb domain
Pfam	PF13837	1.6E-9	88	158	No hit	No description
PROSITE profile	PS50090	6.133	88	143	IPR017877	Myb-like domain
SMART	SM00717	2.7	483	556	IPR001005	SANT/Myb domain
CDD	cd12203	4.44E-22	485	561	No hit	No description
Pfam	PF13837	6.1E-18	485	582	No hit	No description
PROSITE profile	PS50090	5.993	486	554	IPR017877	Myb-like domain
Pfam	PF03004	9.0E-13	656	777	IPR004252	Probable transposase, Ptta/En/Spm, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0001158	Molecular Function	enhancer sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
MFDGMPDQFY QFLASTKNNT TTITTSPTQT VPPLPLSFQQ QQQQQQQPIF DASYLFHYQQ 60 QQQQQQQQQH CTRNEAKGCI LAQEADVPWS NEEVLALLKI RSCLETNPSF PPEFIWDNVS 120 RKLEEVGFKR SAQNCKDKFE EETRSFNTNN IVINSDKSNV ISQNYRLFGE LEELYNCNDD 180 HEYDTNNHQM DDHSGDTRSM SLCMKNQIRD NTRNGNEGEV VREIVGHEMG QVNSEGSDET 240 GERGRDNDID VDIDNEKLEE SSKEVVGRKR KRHKKFEMFK GFYEKIVNNM MEQQEEFHCK 300 VIEDMVKRDE EKIAREEAWK KHEIDMITKE LEVRAHEQAI VGDRQAKLLG FLSKFSSLSS 360 TNLVQNAFIN DKVPKNASLV STSSSLLSQD CVSATTTTTH GQSPMSNLVT QQKCKLPTSL 420 SNENLGPQNP NPIPSNQYDV PTCKAVEFED TSIDAPGVFM DFKSPKNHTP SPSTMLESVK 480 DDTGRRWPRD EVLALINIRC SLFNNNNNNN NGGDNHEKES FSKFPLWERV SHKMLELGYK 540 RSSKRCKEKW ENINKYFRKT KDLNKKRSID SRTCPYFQQL SHLYNNQGIP HDHSDRHENI 600 LESPPENQSR GGQGGSSTSN GATTTTCTMH GNEGRVKKSW IDGTAALRKG YDEWKASDKA 660 KKKAEIQKKN RYSQGEDGKA AGTHTMGRKD MMQYIDKLSV GSSTPPSVPE LVRKSKTSNK 720 KGGFITNKVK NLFDRFNPRV EEHEQTQPDT PIDENRLYYE IVGGHDKKGR VYGTGSASSM 780 YYDRPPPRHS SVGEQSTYSP GILTRLTQEN RSLSQRISTI EELITSQRLS TQPPPTCNPG 840 ADYDLFRRGP FDGDGGSGSG GADVLIY

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

MFDGMPDQFY QFLASTKNNT TTITTSPTQT VPPLPLSFQQ QQQQQQQPIF DASYLFHYQQ  60
QQQQQQQQQH CTRNEAKGCI LAQEADVPWS NEEVLALLKI RSCLETNPSF PPEFIWDNVS  120
RKLEEVGFKR SAQNCKDKFE EETRSFNTNN IVINSDKSNV ISQNYRLFGE LEELYNCNDD  180
HEYDTNNHQM DDHSGDTRSM SLCMKNQIRD NTRNGNEGEV VREIVGHEMG QVNSEGSDET  240
GERGRDNDID VDIDNEKLEE SSKEVVGRKR KRHKKFEMFK GFYEKIVNNM MEQQEEFHCK  300
VIEDMVKRDE EKIAREEAWK KHEIDMITKE LEVRAHEQAI VGDRQAKLLG FLSKFSSLSS  360
TNLVQNAFIN DKVPKNASLV STSSSLLSQD CVSATTTTTH GQSPMSNLVT QQKCKLPTSL  420
SNENLGPQNP NPIPSNQYDV PTCKAVEFED TSIDAPGVFM DFKSPKNHTP SPSTMLESVK  480
DDTGRRWPRD EVLALINIRC SLFNNNNNNN NGGDNHEKES FSKFPLWERV SHKMLELGYK  540
RSSKRCKEKW ENINKYFRKT KDLNKKRSID SRTCPYFQQL SHLYNNQGIP HDHSDRHENI  600
LESPPENQSR GGQGGSSTSN GATTTTCTMH GNEGRVKKSW IDGTAALRKG YDEWKASDKA  660
KKKAEIQKKN RYSQGEDGKA AGTHTMGRKD MMQYIDKLSV GSSTPPSVPE LVRKSKTSNK  720
KGGFITNKVK NLFDRFNPRV EEHEQTQPDT PIDENRLYYE IVGGHDKKGR VYGTGSASSM  780
YYDRPPPRHS SVGEQSTYSP GILTRLTQEN RSLSQRISTI EELITSQRLS TQPPPTCNPG  840
ADYDLFRRGP FDGDGGSGSG GADVLIY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	274	RKRKRHKK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00011	PBM	Transfer from AT5G28300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021773179.1	1e-134	trihelix transcription factor GTL2-like isoform X2
Refseq	XP_021773180.1	1e-134	trihelix transcription factor GTL2-like isoform X3
TrEMBL	A0A0K9QL43	1e-126	A0A0K9QL43_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	3e-80	Trihelix family protein