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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca35331.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | DBB | ||||||||
Protein Properties | Length: 196aa MW: 21170.7 Da PI: 5.6604 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.6 | 2.5e-08 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ +++fC ++ lC+ C ++ H Dca35331.1 3 TICDVCESAAAIFFCAADEAALCRVCDEKVH 33 68**************************998 PP | |||||||
2 | zf-B_box | 27.5 | 6.5e-09 | 53 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 +kC+ +e+ ++ ++Ce +++ lC +C + H g H+ Dca35331.1 53 VPKCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrkHR 92 689*****************************66666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.4E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.139 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-6 | 3 | 34 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.72E-8 | 3 | 45 | No hit | No description |
SMART | SM00336 | 3.9E-14 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.385 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.7E-7 | 53 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.15E-9 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MRTICDVCES AAAIFFCAAD EAALCRVCDE KVHLCNKLAS RHVRVGLDAP NAVPKCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRK HRRYLLLRQR AEFPGDSSGR IEDANSQQPN 120 QASTEREQSN GVFVVPTLNG DNGTDAQIDA SMIDLNARPQ RTGIPSPNNQ GANVFAATND 180 DSASIVPRGF RGDPGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010690759.1 | 5e-99 | PREDICTED: B-box zinc finger protein 19 isoform X2 | ||||
Swissprot | C0SVM5 | 9e-75 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A0K9QIE5 | 3e-86 | A0A0K9QIE5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690759.1 | 2e-98 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 6e-64 | DBB family protein |