PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35233.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 294aa    MW: 33832.4 Da    PI: 10.3567
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35233.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.81e-14103199188
        FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                 +fY +Y+k +GF+ r ++++     + +e++ r + C++ g++++ kkk       ++ + rtr+ +r+gC a+++  + ++++++v+ +++ HnH 
  Dca35233.1 103 EFYVNYGKACGFKPRLATTQVVahGEPNEFKFRYMLCNRAGFKQKAKKKnvtgeesSTCQTRTRMISRVGCPARIHFIRLENKTYKVNIFDEAHNHI 199
                 6************99998877644566789999999*********99999999988788889**************99999***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-12103198IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MFIIEISDIV KYRMMKTSRR NRMLWHALFK CYTMTIQKGM FKIITIEGVI TSSQSSNANT  60
TSIVTTPSCS AIQSGITEFI PPCNEEMKPK LGQIFQTLKE AEEFYVNYGK ACGFKPRLAT  120
TQVVAHGEPN EFKFRYMLCN RAGFKQKAKK KNVTGEESST CQTRTRMISR VGCPARIHFI  180
RLENKTYKVN IFDEAHNHIT TSPESMMFLR SNQNMTSVQK NFVAKAARLK IGGVKAFRGW  240
KELSGGYKNV GATENDFKNF VRDMKKYIGD FDGQMFIENF IRKKEVCKTF YLMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-11FAR1-related sequence 5