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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Dca32404.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family |
GRF |
| Protein Properties |
Length: 277aa MW: 29977.6 Da PI: 9.619 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Dca32404.1 | genome | DCA | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 78.6 | 5.9e-25 | 84 | 127 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44
d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
Dca32404.1 84 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 127
79***************************************998 PP
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| 2 | QLQ | 64.1 | 3.7e-22 | 14 | 50 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
++FT+aQ+ +L++Q+++yKyL an+PvP++Ll +i+k
Dca32404.1 14 GPFTPAQWIELEHQAMIYKYLTANVPVPSNLLIPIRK 50
59*********************************86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MNGGMHGSFT GIRGPFTPAQ WIELEHQAMI YKYLTANVPV PSNLLIPIRK AIQSAGFPGF 60
SIASYPSLSY GWGSFHLGFT GNTDPEPGRC RRTDGKKWRC SRDAVPDQKY CERHINRGRH 120
RSRKPVEGHT GQAASGAASP TTAKVVPVMP SAMSSLVSSG GGGGGVPIGI ATAQHHVKGL 180
QPTAGAINAS TDLNTKRLND QQGLSVMSTT MNLESKDSRY SIPKQHISYE ESLISDFGVV 240
SNDSFLNPTQ KSSYLDIKSY NSLSEFNISQ TQDQYPL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
| Publications
? help Back to Top |
- Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
Plant Cell, 2013. 25(9): p. 3570-83
[PMID:24076976] - Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
PLoS ONE, 2014. 9(5): p. e98477
[PMID:24875638] - Cao Y,Han Y,Jin Q,Lin Y,Cai Y
Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
Front Plant Sci, 2016. 7: p. 1750
[PMID:27933074]
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