PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 197aa MW: 21570.2 Da PI: 6.3799

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca32113.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.3	2e-41	14	116	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara....rdPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+ rdPvyG+vg i+ lq+q+++l++el+ Dca32113.1 14 PCAACKFLRRKCMSGCVFAPYFPPEEPHKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVsnnvRDPVYGCVGAISYLQRQVHRLQKELD 112 7****************************************************************96444489*********************9 PP DUF260 96 llke 99 ++++ Dca32113.1 113 AANA 116 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.018	13	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-40	14	115	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MASSSSSSSS YNAPCAACKF LRRKCMSGCV FAPYFPPEEP HKFANVHKIF GASNVTKLLN 60 DLLPHQREDA VNSLAYEAEA RVSNNVRDPV YGCVGAISYL QRQVHRLQKE LDAANADLLR 120 YACHDISTTP PPPPPPPPPP LPPPPPPPSP FYPPSDDQNT IACIVGNNFE SFPNFLPWNE 180 NIDPRGGSVD DHHQGNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-65	12	134	9	127	LOB family transfactor Ramosa2.1
5ly0_B	1e-65	12	134	9	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678837.1	4e-79	PREDICTED: protein LATERAL ORGAN BOUNDARIES
Refseq	XP_010678838.1	4e-79	PREDICTED: protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FML4	5e-77	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	B9IEW9	7e-75	B9IEW9_POPTR; Uncharacterized protein
STRING	XP_010678837.1	1e-78	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-71	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]