PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca3015.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family DBB
Protein Properties Length: 333aa    MW: 36110.1 Da    PI: 6.1188
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca3015.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.9e-06447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ +e  e++  C  ++  lC+ C  + H        H++v+l
  Dca3015.1  4 QCNVCETAEATVLCCADEAALCDLCDRKVHAAnklaskHQRVSL 47
               7******99*********************66789999998875 PP
2zf-B_box28.43.4e-095494337
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
               ++kC+ ++e    +fC +++ llC++C  ++H        H
  Dca3015.1 54 MPKCDICQETVGYFFCLEDRALLCRKCDIAIHTAnsfvsaH 94
               79********9*********************554555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000215.54E-7347No hitNo description
SMARTSM003364.6E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8025299IPR000315B-box-type zinc finger
SMARTSM003362.6E-145299IPR000315B-box-type zinc finger
PfamPF006431.1E-65493IPR000315B-box-type zinc finger
CDDcd000212.26E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MKIQCNVCET AEATVLCCAD EAALCDLCDR KVHAANKLAS KHQRVSLSHS SSYMPKCDIC  60
QETVGYFFCL EDRALLCRKC DIAIHTANSF VSAHQRFLLT GVQVGLEATE PGSSSPGGNT  120
QSGEKGSDTD NRAAPKRTAP NPTVTQFDRA SSGQNGAHPA KATHSDERSI PMSMSVSEYA  180
KMQPPVQNGT LEDLTQSRMS FVGGSVTGNL SQWPIDEFLA MSDFPQSYGF TDNGSSKADS  240
GKLGSTDSSS ILRSLEDDID SDEQLGQVPD VSWAVLKIPS PPTASGLHWP KNSQLFMDNT  300
DNSVFVPDIS WSTAPNYHHY QPKHNAGKRR RQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675280.11e-149PREDICTED: B-box zinc finger protein 22
TrEMBLA0A0K9R0T51e-141A0A0K9R0T5_SPIOL; Uncharacterized protein
STRINGXP_010675280.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.18e-77light-regulated zinc finger protein 1